Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACJJWD_RS21480 Genome accession   NZ_CP174505
Coordinates   4725439..4725843 (-) Length   134 a.a.
NCBI ID   WP_043006395.1    Uniprot ID   -
Organism   Comamonas testosteroni strain VSPL.dLG     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4720439..4730843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJWD_RS21465 (ACJJWD_21485) - 4722271..4724514 (-) 2244 WP_407714220.1 methyl-accepting chemotaxis protein -
  ACJJWD_RS21470 (ACJJWD_21490) - 4724534..4725061 (-) 528 WP_211457017.1 chemotaxis protein CheW -
  ACJJWD_RS21475 (ACJJWD_21495) - 4725077..4725439 (-) 363 WP_003051510.1 PleD family two-component system response regulator -
  ACJJWD_RS21480 (ACJJWD_21500) pilG 4725439..4725843 (-) 405 WP_043006395.1 PleD family two-component system response regulator Regulator
  ACJJWD_RS21485 (ACJJWD_21505) - 4725895..4726047 (-) 153 WP_034399566.1 rubredoxin -
  ACJJWD_RS21490 (ACJJWD_21510) - 4726163..4727131 (+) 969 WP_043006396.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACJJWD_RS21495 (ACJJWD_21515) hemL 4727115..4728419 (+) 1305 WP_407714221.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACJJWD_RS21500 (ACJJWD_21520) - 4728574..4729209 (-) 636 WP_407714222.1 DNA-3-methyladenine glycosylase I -
  ACJJWD_RS21505 (ACJJWD_21525) - 4729348..4730832 (-) 1485 WP_407714223.1 amino acid permease -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14718.00 Da        Isoelectric Point: 6.2600

>NTDB_id=1077454 ACJJWD_RS21480 WP_043006395.1 4725439..4725843(-) (pilG) [Comamonas testosteroni strain VSPL.dLG]
MTAPAAPLRVLVVDDSNTIRRSAEIFLKQGGYEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1077454 ACJJWD_RS21480 WP_043006395.1 4725439..4725843(-) (pilG) [Comamonas testosteroni strain VSPL.dLG]
GTGACAGCACCTGCTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAATACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTTACGAGGTTCTTCTGGCCGATGACGGCTTCGATGCCTTGTCCAAGGTCAACGACTACCAGCCGCAAC
TCATCTTCTGCGACATTCTGATGCCCAAGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCGCGTTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTGTTCGACAAGGCCCGTGGACGCATGGTGGGCTGTCAGGACTA
TCTGACCAAACCCTTCACCAAAGATCAATTGCTGCAAGCCGTACAACAGTTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.12

87.313

0.507

Multiple sequence alignment