Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACJJVG_RS08230 Genome accession   NZ_CP174503
Coordinates   1804340..1804963 (+) Length   207 a.a.
NCBI ID   WP_108474548.1    Uniprot ID   -
Organism   Pseudocitrobacter faecalis strain AHC.AZy     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799340..1809963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJJVG_RS08210 (ACJJVG_08210) - 1799757..1801520 (-) 1764 WP_407732447.1 AAA family ATPase -
  ACJJVG_RS08215 (ACJJVG_08215) matP 1801704..1802156 (+) 453 WP_113857338.1 macrodomain Ter protein MatP -
  ACJJVG_RS08220 (ACJJVG_08220) ompA 1802224..1803270 (-) 1047 WP_108474550.1 porin OmpA -
  ACJJVG_RS08225 (ACJJVG_08225) sulA 1803622..1804131 (-) 510 WP_407732448.1 SOS-induced cell division inhibitor SulA -
  ACJJVG_RS08230 (ACJJVG_08230) sxy/tfoX 1804340..1804963 (+) 624 WP_108474548.1 TfoX/Sxy family DNA transformation protein Regulator
  ACJJVG_RS08235 (ACJJVG_08235) yccS 1804960..1807086 (-) 2127 WP_407732449.1 YccS family putative transporter -
  ACJJVG_RS08240 (ACJJVG_08240) - 1807105..1807551 (-) 447 WP_108474546.1 YccF domain-containing protein -
  ACJJVG_RS08245 (ACJJVG_08245) helD 1807672..1809726 (+) 2055 WP_407732450.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23550.41 Da        Isoelectric Point: 10.5404

>NTDB_id=1077423 ACJJVG_RS08230 WP_108474548.1 1804340..1804963(+) (sxy/tfoX) [Pseudocitrobacter faecalis strain AHC.AZy]
MKKISYKRIYQSQEYLAPLGVVRSRSLFGGYSLSINNTVFAMVSEGELYLRACEETAVYQRKVKTPLLTLKKRGGPLQLN
YFRVDDTLWQNQKLLLRLSKLSLKDAQREKKDRQVSQRLKDLPNLSFHMELLMAEAGIKNVADLRQLGAKDAWAKLRRLR
ENLSVGFILSLEGALTGVHAAAIPLRRRDELIDWASALNLHAPAQAD

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1077423 ACJJVG_RS08230 WP_108474548.1 1804340..1804963(+) (sxy/tfoX) [Pseudocitrobacter faecalis strain AHC.AZy]
ATGAAAAAAATATCATATAAACGGATTTATCAATCCCAGGAATATCTTGCGCCTCTTGGGGTCGTGCGCTCCCGATCGCT
CTTTGGTGGATATAGCCTCTCAATTAATAACACCGTTTTTGCCATGGTCTCTGAAGGGGAGCTATACCTTCGGGCTTGCG
AGGAAACGGCGGTGTATCAACGGAAAGTGAAAACGCCACTTTTAACGCTGAAGAAGAGAGGCGGCCCGCTTCAGCTCAAC
TATTTCCGCGTCGATGATACGTTATGGCAGAACCAAAAATTGTTGCTGCGCTTAAGTAAGCTTTCGTTAAAAGACGCACA
GCGCGAGAAAAAAGATCGTCAGGTTTCGCAACGGCTGAAGGACTTGCCTAATCTTTCCTTCCATATGGAATTGTTGATGG
CCGAGGCGGGAATTAAGAACGTGGCTGATTTACGCCAATTGGGTGCCAAAGACGCCTGGGCCAAATTACGTCGCCTGCGC
GAAAACCTGAGTGTGGGGTTTATTTTATCGCTCGAAGGAGCGCTGACGGGCGTTCATGCCGCAGCCATTCCGTTACGGCG
ACGCGATGAGTTGATTGACTGGGCAAGCGCGCTGAACCTCCACGCACCCGCCCAGGCTGATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

55.276

96.135

0.531

Multiple sequence alignment