Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACJD0W_RS17580 Genome accession   NZ_CP174457
Coordinates   523092..524189 (+) Length   365 a.a.
NCBI ID   WP_407833819.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 518092..529189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS17550 - 518546..519538 (+) 993 WP_407833817.1 Gfo/Idh/MocA family protein -
  ACJD0W_RS17555 - 519603..520940 (-) 1338 WP_407833818.1 MATE family efflux transporter -
  ACJD0W_RS17560 - 521064..521378 (-) 315 WP_005453573.1 DUF496 family protein -
  ACJD0W_RS17565 - 521616..521819 (+) 204 WP_010451278.1 hypothetical protein -
  ACJD0W_RS17570 - 521913..522566 (+) 654 WP_143694108.1 YceH family protein -
  ACJD0W_RS17575 - 522563..522868 (+) 306 WP_010451282.1 GIY-YIG nuclease family protein -
  ACJD0W_RS17580 luxP 523092..524189 (+) 1098 WP_407833819.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACJD0W_RS17585 luxQ 524189..526774 (+) 2586 WP_407833820.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  ACJD0W_RS17590 - 526894..527556 (-) 663 WP_045391311.1 PilZ domain-containing protein -
  ACJD0W_RS17595 - 527692..528636 (-) 945 WP_407833821.1 DMT family transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41705.15 Da        Isoelectric Point: 5.5550

>NTDB_id=1077143 ACJD0W_RS17580 WP_407833819.1 523092..524189(+) (luxP) [Vibrio rotiferianus strain BD182406]
MKKALIFSLFSLIGVSSNAYSTQVLDGYWAYQEYLEQYPNQRALTEKLGDAVRNYPVPLKTEQRHPLKISVVYPGQQVSD
YWVRNIEAFEKRLDKLKISYQINQVFTRPNADIKQQSMSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSETKLILQNI
TTPVREWEKRQPFLYVGFDHAEGSRALAKEFGKRFQKESKFSVLYFSEGYISDVRGDTFIEQVTRDNGFALESAFYTKAT
KSSGYQAAKLSLEKYPDIDFMYACSTDVALGAAEALDDLGRDDIMINGWGGGSAELNAIQRGQLDFTVMRMNDDTGIAMA
EAIKWDLEGQPVPTVFSGDFEVVTKSDAPERIEQLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1077143 ACJD0W_RS17580 WP_407833819.1 523092..524189(+) (luxP) [Vibrio rotiferianus strain BD182406]
ATGAAAAAAGCGCTTATATTTTCGCTATTCTCCTTAATTGGTGTTTCTTCAAACGCCTACTCGACCCAGGTACTAGACGG
GTACTGGGCATATCAGGAGTATTTAGAACAATATCCAAACCAGCGAGCTCTCACTGAAAAGTTGGGGGATGCTGTTAGAA
ATTATCCGGTTCCGCTCAAAACAGAGCAGCGCCACCCTCTCAAAATATCGGTTGTTTATCCTGGGCAACAAGTCTCTGAT
TACTGGGTGAGAAATATTGAAGCTTTTGAGAAAAGGCTAGATAAGCTGAAGATTAGCTACCAGATTAACCAGGTTTTTAC
GCGGCCAAATGCTGATATCAAGCAGCAAAGCATGTCATTAATGGAAGCTCTCAAGAGTAAATCTGACTATTTGATTTTTA
CGCTTGATACGACTCGCCATCGTAAATTTATTGAGCATGTCCTAGACTCATCAGAAACCAAACTCATTTTGCAGAACATC
ACCACACCAGTGAGAGAGTGGGAGAAAAGGCAGCCATTTCTCTATGTTGGTTTTGATCATGCTGAAGGGAGTCGTGCACT
AGCCAAAGAGTTCGGAAAACGATTCCAAAAAGAGAGTAAATTCAGTGTGTTGTATTTCTCTGAGGGATACATTAGTGATG
TCCGAGGGGATACGTTTATTGAGCAGGTTACTCGTGACAATGGTTTTGCCCTAGAGTCTGCCTTCTATACAAAAGCGACA
AAATCTTCCGGGTATCAAGCCGCTAAACTGAGCTTAGAAAAATATCCTGATATTGACTTTATGTACGCCTGCTCAACCGA
CGTGGCACTTGGTGCAGCTGAAGCGTTAGATGATCTTGGTCGCGATGATATTATGATTAATGGTTGGGGTGGCGGCTCGG
CGGAGCTTAACGCTATTCAACGTGGTCAGCTTGATTTTACTGTTATGCGAATGAATGATGATACAGGTATTGCAATGGCT
GAAGCGATAAAGTGGGATTTAGAAGGGCAGCCTGTACCAACCGTATTTTCTGGTGATTTTGAGGTAGTGACTAAGTCAGA
CGCACCTGAACGAATTGAACAACTCAAGAAACGCGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.912

99.726

0.627

Multiple sequence alignment