Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   ACJD0W_RS12145 Genome accession   NZ_CP174456
Coordinates   2677399..2680785 (+) Length   1128 a.a.
NCBI ID   WP_010450108.1    Uniprot ID   A0A2K7SNE8
Organism   Vibrio rotiferianus strain BD182406     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672399..2685785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS12120 erpA 2672743..2673084 (-) 342 WP_005449174.1 iron-sulfur cluster insertion protein ErpA -
  ACJD0W_RS12125 hemL 2673331..2674626 (+) 1296 WP_005425271.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACJD0W_RS12130 - 2674722..2674850 (-) 129 WP_282065255.1 hypothetical protein -
  ACJD0W_RS12135 - 2674986..2676071 (+) 1086 WP_005425277.1 AI-2E family transporter -
  ACJD0W_RS12140 rsmC 2676148..2677170 (+) 1023 WP_038883889.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  ACJD0W_RS12145 chiS 2677399..2680785 (+) 3387 WP_010450108.1 response regulator Regulator
  ACJD0W_RS12150 - 2681632..2683314 (+) 1683 WP_038884260.1 ABC transporter substrate-binding protein -
  ACJD0W_RS12155 - 2683486..2684472 (+) 987 WP_038884262.1 ABC transporter permease -
  ACJD0W_RS12160 - 2684475..2685500 (+) 1026 WP_010450114.1 ABC transporter permease -

Sequence

Protein


Download         Length: 1128 a.a.        Molecular weight: 127301.00 Da        Isoelectric Point: 5.7766

>NTDB_id=1077122 ACJD0W_RS12145 WP_010450108.1 2677399..2680785(+) (chiS) [Vibrio rotiferianus strain BD182406]
MFKFYKKQKFKRLQNTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFNRLGQSEEESRENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNYGTNLLTGRYKDAALGRTFKRLSEDVSARRKVNEDYTPVVISDFDVENGKQVAWLGAPI
IQQGYLHSYAMFRLPSNGITKLIAEINRDTPIETLLVGSDHKPRTINTKSNEINNSLIVVDKALQGETSVETYTNGVGED
IMAAFAPISNRGITWALVVQLPEKLAFARVHQLEKLFVIAMFIAIILVIIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNAELESNIKLIQKQNEDLQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLASLVDDLLDYHKMRYGSMDIQKSAVNLPSATQLVLELSSHLLGNKTIRI
INQVPSDLVPVSADPQRLEQVLYNLIGNAIKYTSEGKIVISAGVIDDHIRVQVVDTGQGIPAEQLEHIFEPLIQAGQDST
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPVASEDEISLTQNLSVRGHFQVPENGVEVNEEPSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVTDGPETLELVEKEKPELLLLDIMMPGMSGYQVCSELRKHYDHAELPVIM
LTALNQTEDRVRGFEAGANDYLSKPFNKHELAARIQAHLTASKAEQRRIENKQLESELKQRAQVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLRRSSADELIAPKYLTVKQPHYCGKIDIYVEDVRQNIEADILKLPEGS
GLDVMYIFNVGGGASATRIYNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQDLMREILVDTMIHA
LDYWESATGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYLRIETLPKTPRWRTVLSSIEFILEHCKEQSPDRSHIEAQRD
KLQRLLTS

Nucleotide


Download         Length: 3387 bp        

>NTDB_id=1077122 ACJD0W_RS12145 WP_010450108.1 2677399..2680785(+) (chiS) [Vibrio rotiferianus strain BD182406]
ATGTTTAAGTTTTACAAAAAGCAGAAATTTAAGCGACTGCAGAATACTCTCATGACCGCATTTCTGGTCTTAAGTATTAC
GCCTTTGACGATCACTGCGATTTTCTTCCTACAATCACACAGTAAAGATTTACAAGAACAGAGTACATCTCATCTTCTCT
CTGTCCGTGATACTAAGCAGCAGCAAATCTTAGATTATTTTGCAGCCCAAGAAACCGAAGTCATGGGCTTTGTTCGTTCT
GAGCTCGCATACGCGAGCGGCGGACGCTTCTATGGTCTCGTGAATGCATTTAATCGCTTGGGTCAAAGTGAAGAAGAATC
TCGTGAAAATGCACAGCAACGCTACATAAAAGGTAGTGGTGATCAGATAAAAACGTCGATTTTACCCGAATCTTCCAATT
ATGTAGGTAGTGAGCGTTATCGACTACTACATAAACGTTATCACTGGGCATACCTAGAGCTGCTTAAACGTTCTGACTTC
AACGACATTCTATTGGTCGATATTGACGGCAACGTGACGTATTCAATCAACAAAGATGACAACTACGGTACCAACCTACT
AACAGGACGCTATAAAGATGCGGCTTTAGGCAGAACATTCAAGCGTCTATCTGAAGATGTAAGTGCTCGCCGTAAAGTCA
ATGAAGACTATACGCCAGTTGTTATTTCTGACTTTGATGTAGAAAACGGTAAACAAGTTGCTTGGCTTGGCGCTCCAATT
ATCCAACAAGGCTACCTACACAGCTATGCAATGTTCCGCCTACCGAGTAACGGGATCACCAAATTAATAGCGGAGATCAA
CCGTGACACACCTATCGAAACTCTTTTAGTTGGGTCTGATCATAAACCAAGGACAATCAACACCAAAAGTAACGAAATTA
ACAATAGCTTAATTGTGGTTGATAAGGCGCTACAAGGTGAAACTAGCGTAGAAACCTACACCAATGGAGTGGGTGAAGAT
ATCATGGCTGCATTTGCGCCAATCAGCAATCGAGGGATTACTTGGGCGCTAGTTGTTCAATTGCCAGAAAAACTCGCCTT
TGCTCGCGTGCATCAATTAGAAAAGTTGTTTGTTATCGCGATGTTTATCGCCATTATTCTAGTGATTATTGCATCGCACT
ACCTATCTAACTTCATCACATCCCCTTTACTTAAGCTGACTTGGGCAGCAGAGAAAGTATCCGCTGGTGATCTAGATGAA
ACGACTTTTAATACTGAACGAAAAGACGAAATCGGTCGCCTGGCAATCAGCTTCGAACGAATGCAGCGCTCTATCCGCGA
AAAAATCCAGACGATTAAACAACAAAATGCAGAACTAGAGAGCAACATTAAACTCATTCAAAAGCAAAATGAGGATTTGC
AGCTCGCTGATAAGCTCAAAGATGAATTCCTTGCCACCACTTCTCACGAGTTAAGAACACCATTACATGGGATGGTTGGC
ATTGCCGAGACATTAGTTTCTGGCGCGAACGGAGTCATTCCTGCGAGCCAGAAATACCAGCTCGATATCATTATTAAAAG
TGGCCAACGACTCGCTAGCCTAGTTGACGACCTACTTGATTACCATAAGATGCGCTACGGCAGTATGGATATTCAAAAAT
CTGCCGTTAACTTACCAAGTGCTACGCAACTGGTTCTTGAGCTGTCTAGCCACTTGTTAGGCAATAAAACGATTCGGATT
ATCAATCAAGTTCCTAGTGATCTTGTTCCAGTATCGGCCGACCCTCAGCGCTTAGAACAAGTTCTCTATAACCTTATTGG
CAATGCGATTAAGTACACATCTGAAGGTAAAATTGTTATTTCAGCAGGTGTGATAGACGATCACATCCGAGTGCAAGTTG
TAGATACAGGACAAGGGATACCAGCGGAGCAATTAGAGCACATCTTTGAACCTCTGATTCAAGCAGGCCAAGACTCCACC
CGATACCGCCAAGGTGCTGGGCTCGGCCTATCGATCAGCCGTCAATTGATTGAACTGATGGGCGGCTCTCTCTACGTGAG
TAGCCAGCCGATGGTTGGCACTACATTTAGTTTCACGCTACCTGTAGCAAGTGAAGATGAGATCTCTCTGACTCAAAACC
TTTCAGTTCGTGGCCATTTCCAGGTGCCAGAAAACGGAGTCGAAGTAAATGAGGAGCCTTCACTTCCGGAGAACCCGGAC
GGTCCACTACTGTATGTTGCTGATGATGAGCCTGTAAACCTACGTGTGCTAGAAAGCTTCTTACGCCTTGAAGGCTACCG
AGTAAGAACGGTAACCGATGGTCCAGAAACACTAGAGCTTGTTGAGAAAGAAAAACCTGAGCTGTTATTGCTTGATATCA
TGATGCCTGGAATGAGTGGCTACCAAGTTTGTAGCGAACTACGTAAACACTACGATCATGCCGAGCTTCCCGTCATTATG
CTCACTGCACTCAATCAAACTGAAGATCGTGTTCGAGGATTTGAAGCTGGCGCGAATGACTATTTATCCAAGCCATTCAA
TAAGCATGAACTAGCAGCAAGGATTCAGGCACATTTAACCGCAAGTAAGGCAGAGCAACGTCGAATCGAGAATAAGCAGC
TTGAGAGTGAACTAAAGCAACGCGCTCAAGTAGAAGCTAGCTTGCTAGAAACTCAAGGGCGACTTTTAGAGCAACTAGAG
TCCGCTCCTGAAGCGATCATATGTTTACGGGAAGACCAACGAATTCGATTTGCGAATGAGGCTGCCTGCAAACTGTTTAA
GCGCAGCCTAGAACAGTTGCGACGCTCATCCGCAGATGAGCTTATTGCCCCTAAGTATTTGACCGTTAAACAGCCTCATT
ACTGCGGAAAAATAGATATTTATGTTGAAGATGTTCGCCAAAATATTGAAGCGGATATCCTCAAGCTTCCTGAAGGTTCA
GGCCTCGATGTTATGTATATCTTTAACGTTGGAGGGGGAGCAAGCGCGACTCGAATTTACAATCTGGAAACGGCTGTAGA
AGTATTGTCTAGCTATGCATTTGATGGCGATAAAGACCAACTACAAAAACTGAAGGAACTGGGTGGCGAGTTTACACGCC
TAGCCGATAAAGCTCTGGGTAACAAGAAGGATAAGCAGGATCTAATGCGGGAAATACTGGTTGATACCATGATTCATGCC
CTAGATTACTGGGAGTCTGCTACCGGAGAGAGTAAATTTGCTTTTGCGGAACAAAGCGGCCTTTGGCGAGTGTACTTAGA
CAGAAGCACCCTCCAAACACGAACCTTAGATAAATACCTACGTATCGAGACGCTACCTAAGACACCTCGTTGGCGAACTG
TACTAAGCTCTATAGAGTTTATTCTTGAGCATTGCAAAGAACAAAGCCCCGATCGTAGCCACATTGAAGCACAGCGCGAT
AAACTGCAAAGGTTACTCACTAGCTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-682)

HAMP domain (HAMP)

(375-427)

Response regulator receiver domain (Response_reg)

(726-836)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K7SNE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

76.439

100

0.765

Multiple sequence alignment