Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACJD0W_RS08705 Genome accession   NZ_CP174456
Coordinates   1908591..1910012 (+) Length   473 a.a.
NCBI ID   WP_038886937.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903591..1915012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS08680 cobU 1904103..1904636 (-) 534 WP_407832229.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  ACJD0W_RS08685 - 1904633..1905439 (-) 807 WP_407832230.1 adenosylcobinamide-GDP ribazoletransferase -
  ACJD0W_RS08690 cobT 1905439..1906482 (-) 1044 WP_407832231.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACJD0W_RS08695 - 1906502..1907113 (-) 612 WP_285335878.1 flavin reductase family protein -
  ACJD0W_RS08700 - 1907765..1908460 (+) 696 WP_407833127.1 NAD(P)H-binding protein -
  ACJD0W_RS08705 sbcB 1908591..1910012 (+) 1422 WP_038886937.1 exodeoxyribonuclease I Machinery gene
  ACJD0W_RS08710 - 1910071..1910445 (+) 375 WP_010448702.1 CidA/LrgA family protein -
  ACJD0W_RS08715 - 1910447..1911124 (+) 678 WP_010448701.1 LrgB family protein -
  ACJD0W_RS08720 cdd 1911390..1912277 (+) 888 WP_143692632.1 cytidine deaminase -
  ACJD0W_RS08725 purT 1912424..1913599 (+) 1176 WP_071236206.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACJD0W_RS08730 - 1913679..1914329 (-) 651 WP_071236205.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54569.76 Da        Isoelectric Point: 4.8709

>NTDB_id=1077119 ACJD0W_RS08705 WP_038886937.1 1908591..1910012(+) (sbcB) [Vibrio rotiferianus strain BD182406]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKIKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLPPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLTNLALLRQHPEIREKLINLFSIEREYEKSDDVDTQLYDGFFSPADRAAMDIIRETDPTNLAALDIEFDDKR
IKPLLFRYRARHYSSTLDDQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1077119 ACJD0W_RS08705 WP_038886937.1 1908591..1910012(+) (sbcB) [Vibrio rotiferianus strain BD182406]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCCGGCGTCCGCACTGATGAAAACTTCAATATCATTGGTGAGCCTTTGGTGATGTACTGTCGCCCACCCGCTG
ATTATCTTCCTTCACCTGAAGCAGCTTTGATCACTGGCATTACACCACAAAAAGCGATGCAAGAAGGTCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAACCAAATACTACTAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGTTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGACGTCATGCGCGCGTGTCACGCCCTCCGTCCTGAAGGTGTGGAATGGCCAGAAAATGATGAAGGTTTCCCG
AGTTTCAAACTTGAACATTTATCTGTGGCAAATGGCATCGAACACAGCAACGCCCACGATGCGATGGCAGACGTGATTGC
AACAATTGAGATGGCGAAAAAAATCAAAGCGGCTCAACCTAAGTTGTTTGATTACTTCTTCTCTATGCGTAATAAGCGCA
AGCTTAACGAACTGGTCGATATCGTTAACATGACGCCATTGATGCACGTATCTGGGATGTTGGGACGTGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTTGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCAAAAGATCCACA
GCCAATTCTTGAGCTTTCCGCAGAAGAGTTAAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGCGACCTGCCGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATTCTAGCGCCAGCGAAAACACTCACTGCTGAGAATGCAGAATCT
ATTGGTATTGACCGTCAGCAATGTCTAACTAACCTCGCTTTGTTACGTCAACACCCAGAAATTCGTGAGAAACTCATTAA
CCTATTCTCTATTGAGCGTGAGTACGAAAAGAGTGATGATGTAGATACGCAACTTTACGATGGTTTTTTCTCGCCAGCTG
ATCGCGCGGCGATGGACATCATTCGTGAAACGGACCCAACTAACCTAGCTGCACTGGATATTGAATTTGATGACAAGCGC
ATCAAACCGTTGCTGTTTCGTTACCGTGCTCGTCACTACTCAAGCACACTAGATGACCAAGAGCAAAGACGCTGGGCACA
GCACTGTCGTGAAGTCTTTGAAAGCCAGATTGAAGAGTATATGCTTAATTTAGAGAACTTAGTTCACGAACATGAAAGTG
ACGAAAAAAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment