Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACJD0W_RS06870 Genome accession   NZ_CP174456
Coordinates   1506027..1507532 (-) Length   501 a.a.
NCBI ID   WP_407833035.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   promote HapR production (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1493883..1526846 1506027..1507532 within 0


Gene organization within MGE regions


Location: 1493883..1526846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS06820 - 1493883..1494515 (-) 633 WP_407833027.1 sugar transferase -
  ACJD0W_RS06825 - 1494526..1495716 (-) 1191 WP_407833028.1 glycosyltransferase family 2 protein -
  ACJD0W_RS06830 - 1495713..1496819 (-) 1107 WP_407833029.1 glycosyltransferase -
  ACJD0W_RS06835 - 1497003..1498430 (-) 1428 WP_038885945.1 chain-length determining protein -
  ACJD0W_RS06840 - 1498427..1499545 (-) 1119 WP_407833030.1 glycosyltransferase -
  ACJD0W_RS06845 - 1499624..1501021 (-) 1398 WP_170001013.1 O-antigen ligase -
  ACJD0W_RS06850 - 1501018..1502448 (-) 1431 WP_407833031.1 lipopolysaccharide biosynthesis protein -
  ACJD0W_RS06855 - 1502441..1503607 (-) 1167 WP_407833032.1 glycosyltransferase family 4 protein -
  ACJD0W_RS06860 - 1503620..1504804 (-) 1185 WP_407833033.1 glycosyltransferase -
  ACJD0W_RS06865 - 1505000..1506046 (-) 1047 WP_407833034.1 glycosyltransferase family 4 protein -
  ACJD0W_RS06870 luxO 1506027..1507532 (-) 1506 WP_407833035.1 sigma-54-dependent transcriptional regulator Regulator
  ACJD0W_RS06875 - 1507678..1508055 (-) 378 WP_407833036.1 Hpt domain-containing protein -
  ACJD0W_RS06880 - 1508069..1508749 (-) 681 WP_088880860.1 tyrosine-protein kinase family protein -
  ACJD0W_RS06885 - 1508749..1510827 (-) 2079 WP_407833121.1 SLBB domain-containing protein -
  ACJD0W_RS06890 - 1510851..1511684 (-) 834 WP_071235403.1 OmpA family protein -
  ACJD0W_RS06895 - 1511718..1512035 (-) 318 WP_010448144.1 STAS domain-containing protein -
  ACJD0W_RS06900 - 1512418..1513254 (+) 837 WP_029560981.1 DNA ligase -
  ACJD0W_RS06905 - 1513257..1514270 (-) 1014 WP_038884170.1 DUF3080 domain-containing protein -
  ACJD0W_RS06910 - 1514370..1515740 (-) 1371 WP_010448137.1 MATE family efflux transporter -
  ACJD0W_RS06915 - 1516022..1516633 (+) 612 WP_038884169.1 riboflavin synthase -
  ACJD0W_RS06920 - 1516725..1516919 (-) 195 WP_010448133.1 CPXCG motif-containing cysteine-rich protein -
  ACJD0W_RS06925 - 1517185..1518051 (-) 867 WP_407833037.1 fructosamine kinase family protein -
  ACJD0W_RS06930 - 1518276..1519247 (+) 972 WP_010448129.1 response regulator -
  ACJD0W_RS06935 - 1519247..1520221 (+) 975 WP_038884166.1 sensor domain-containing diguanylate cyclase -
  ACJD0W_RS06940 - 1520348..1520692 (+) 345 WP_010448125.1 DUF3802 family protein -
  ACJD0W_RS06945 - 1520729..1521208 (-) 480 WP_038884165.1 C40 family peptidase -
  ACJD0W_RS06950 - 1521358..1523376 (+) 2019 WP_407833038.1 methyl-accepting chemotaxis protein -
  ACJD0W_RS06955 - 1523676..1526846 (+) 3171 WP_407833039.1 HD domain-containing phosphohydrolase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56397.06 Da        Isoelectric Point: 6.1652

>NTDB_id=1077118 ACJD0W_RS06870 WP_407833035.1 1506027..1507532(-) (luxO) [Vibrio rotiferianus strain BD182406]
MRPKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAKQFIERTKPQLVILDIKLPDMSGEDVLDWINENNIQTSVIIA
TAHGSVNLAVNLIQKGAEDFLEKPINADRLKTSVSLHLKRAKLEHLVENIQATFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTTASVFIVGESGTGKEVCAEAIHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGASREMKVDVRIICATNRDPLEEVEQGRFREDLYYRVHVVPIDMPPLSERGSDI
VTLATHFLNTYAKQDKKKFKSLSKEVQTLFKAYAWPGNVRQLQNIIRNIVVLNNEEQVSLSHLPSQLTAKKRAQTDTTSA
NFGRDSVNHVQQITPSSDLENIETRPSYIDEPIARTHSNSTPYFNDDGSIRPMWEVEREAIQNAINFCDGNVLNAAVMLE
LSPSTVYRKKQAWEADEAKIE

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=1077118 ACJD0W_RS06870 WP_407833035.1 1506027..1507532(-) (luxO) [Vibrio rotiferianus strain BD182406]
ATGAGACCGAAGGTTTTATTGGTAGAGGATTCAACCTCTCTTGCTATCTTATATAAACAATATGTTAAAGATGAGCCTTA
TGATATTTTCCATGTTGAAACAGGTAGAGAGGCTAAACAGTTTATTGAACGAACCAAACCTCAACTTGTCATTCTGGATA
TTAAGTTACCCGATATGTCTGGTGAAGACGTCTTGGATTGGATTAACGAGAACAATATTCAAACCTCGGTAATTATTGCA
ACGGCTCATGGCAGCGTAAATTTAGCGGTCAATCTGATTCAAAAGGGAGCAGAAGACTTTTTAGAAAAGCCCATCAATGC
CGATCGCCTCAAAACATCCGTCTCATTGCACCTCAAGCGGGCGAAGCTCGAACATTTAGTTGAAAACATCCAAGCAACTT
TCGATAGACACAACTATCACGGCTTTATCGGTTCTAGCCTACCAATGCAGGCTGTTTACAAAACAATCGATGCTGTAGCC
CCTACTACAGCCAGTGTGTTCATTGTCGGAGAGAGTGGCACGGGTAAAGAAGTTTGTGCAGAAGCTATCCACCGTCAAAG
TGATCGTCGTGATAAGCCTTTCATTGCTATTAACTGCGGTGCTATTCCGAGAGATCTTATGGAGAGTGAGATATTTGGTC
ATGTCAAAGGAGCATTCACCGGAGCAACCACAGACCGAAAAGGAGCGGCCACACTGGCACATGGTGGTACATTGTTTCTG
GATGAACTATGCGAAATGGAGCTAGAAATGCAGAAAAAGCTCCTGCGCTTCTTACAGACAGGAACCTACACACCACTAGG
CGCTAGCAGAGAGATGAAGGTAGACGTACGCATTATCTGTGCAACGAACCGAGATCCTCTAGAAGAAGTTGAACAAGGAC
GATTTCGTGAAGATTTGTATTATCGTGTACATGTTGTGCCAATCGATATGCCACCATTATCCGAGAGAGGAAGTGACATA
GTCACACTTGCCACTCACTTCTTGAACACTTATGCAAAACAAGACAAGAAAAAATTCAAATCGTTAAGTAAAGAGGTTCA
AACTCTTTTCAAAGCGTACGCTTGGCCGGGCAATGTGCGACAACTACAAAACATCATTCGCAACATTGTTGTTTTGAATA
ACGAAGAGCAAGTTTCCCTATCCCACTTACCTTCACAGTTAACCGCCAAAAAGAGAGCTCAAACAGACACAACAAGCGCT
AATTTTGGTCGCGATTCAGTAAACCATGTACAGCAGATCACACCGAGTTCCGACCTAGAAAACATCGAAACACGCCCATC
TTATATCGATGAACCTATCGCGCGTACTCACTCAAACAGTACCCCATATTTTAATGACGATGGCAGCATTCGCCCAATGT
GGGAAGTCGAGCGAGAAGCGATTCAAAACGCCATTAACTTCTGTGATGGCAATGTTCTCAATGCCGCTGTAATGCTGGAG
CTAAGTCCATCAACGGTATACCGCAAGAAACAAGCGTGGGAAGCAGATGAGGCCAAAATTGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(453-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.59

97.405

0.483

Multiple sequence alignment