Detailed information NTG1077108

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ACJD0W_RS01390
• Genome accession: NZ_CP174456
• Coordinates: 292297..293304 (-)
• Length: 335 a.a.
• NCBI ID: WP_038885365.1
• Uniprot ID: -
• Organism: Vibrio rotiferianus strain BD182406
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 287297..298304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJD0W_RS01360	zapB	287400..287642 (+)	243	WP_010445262.1	cell division protein ZapB	-
ACJD0W_RS01365	rraA	287706..288230 (-)	525	WP_010445263.1	ribonuclease E activity regulator RraA	-
ACJD0W_RS01370	-	288306..289223 (-)	918	WP_010445265.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ACJD0W_RS01375	hslU	289502..290833 (-)	1332	WP_010445268.1	HslU--HslV peptidase ATPase subunit	-
ACJD0W_RS01380	hslV	290863..291414 (-)	552	WP_009698878.1	ATP-dependent protease subunit HslV	-
ACJD0W_RS01385	ftsN	291615..292160 (-)	546	WP_010445271.1	cell division protein FtsN	-
ACJD0W_RS01390	cytR	292297..293304 (-)	1008	WP_038885365.1	DNA-binding transcriptional regulator CytR	Regulator
ACJD0W_RS01395	priA	293509..295710 (-)	2202	WP_407832659.1	primosomal protein N'	-
ACJD0W_RS01400	rpmE	296008..296226 (+)	219	WP_010445294.1	50S ribosomal protein L31	-
ACJD0W_RS01405	rpsJ	296683..296994 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
ACJD0W_RS01410	rplC	297009..297638 (+)	630	WP_005435072.1	50S ribosomal protein L3	-
ACJD0W_RS01415	rplD	297656..298258 (+)	603	WP_005435074.1	50S ribosomal protein L4	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36876.45 Da
• Isoelectric Point: 6.2459

>NTDB_id=1077108 ACJD0W_RS01390 WP_038885365.1 292297..293304(-) (cytR) [Vibrio rotiferianus strain BD182406]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPESAALCQFRQQGYQQALRRAGITKEAQYSIVTDFTFEGGAQAIRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDISIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=1077108 ACJD0W_RS01390 WP_038885365.1 292297..293304(-) (cytR) [Vibrio rotiferianus strain BD182406]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTCTCTACCGCAACCGTGTCGCGAGCTCTGATGAATCCGGAAAA
AGTATCATCATCGACACGAAAAAGAGTAGAAGATGCAGTACTTGAAGCTGGCTACTCACCGAATTCATTAGCACGCAACT
TACGTAGAAATGAATCAAAAACCATTGTCACTATAGTTCCCGACATCTGCGATCCGTACTTCTCTGAAATCATTCGTGGT
ATCGAAGATGCAGCAATGGAACATGGCTACCTAGTCCTACTGGGCGACAGTGGTCAACAGAAAAAACGAGAAAGCTCATT
TGTAAACCTCGTCTTTACCAAACAAGCTGATGGCATGCTACTACTAGGCACCGATTTACCATTCGATGTCAGCAAGCCAG
AACAGAAAAACTTACCGCCTATGGTGATGGCTTGTGAGTTTGCTCCTGAGCTAGAACTGCCAACCGTACACATTGATAAC
CTAACCTCTGCTTTTGAAGCTGTGAACTACCTAACTCAATTAGGCCATAAGCGTATCGCTCAAATCTCTGGTCCAGAGAG
TGCTGCACTATGCCAATTCCGTCAGCAGGGTTACCAACAGGCGTTACGTCGTGCGGGCATTACTAAAGAAGCACAATACA
GTATCGTTACTGACTTCACCTTTGAAGGCGGTGCACAAGCAATCCGTAAACTACTCGAACTACCAGAGCCACCTACCGCG
ATATTCTGTCATTGTGACACCATGGCTATTGGTGCGATCCAAGAAGCAAAACGCCTAGGATTGAGAGTTCCACAAGACAT
CTCAATTGTTGGGTTTGACGATATCCAATTTGCTCAGTACTGCGATCCACCGTTAACTACCATCTCGCAACCTCGTTATG
AGATCGGTCGCCAGGCCATGCTAATGATGCTAGAGCTGTTAAAAGGTCATGATGTGCACTCCGGCTCTCGCTTACTTGAG
ACCAAGCTTGTTGTTCGAGGTAGTGCTGCTCCACCACCATTACGCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	95.181	99.104	0.943
cytR	Vibrio cholerae C6706	91.566	99.104	0.907