Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACGBX2_RS18435 Genome accession   NZ_CP174427
Coordinates   3824339..3824962 (-) Length   207 a.a.
NCBI ID   WP_032688494.1    Uniprot ID   A0A2X2DYW5
Organism   Raoultella planticola strain 2024CK-01508     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 3819339..3829962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGBX2_RS18420 (ACGBX2_18430) helD 3819575..3821629 (-) 2055 WP_142630399.1 DNA helicase IV -
  ACGBX2_RS18425 (ACGBX2_18435) - 3821752..3822198 (+) 447 WP_004860167.1 YccF domain-containing protein -
  ACGBX2_RS18430 (ACGBX2_18440) yccS 3822216..3824351 (+) 2136 WP_032700361.1 YccS family putative transporter -
  ACGBX2_RS18435 (ACGBX2_18445) sxy/tfoX 3824339..3824962 (-) 624 WP_032688494.1 TfoX/Sxy family DNA transformation protein Regulator
  ACGBX2_RS18440 (ACGBX2_18450) sulA 3825423..3825932 (+) 510 WP_032688495.1 SOS-induced cell division inhibitor SulA -
  ACGBX2_RS18445 (ACGBX2_18455) ompA 3826285..3827355 (+) 1071 WP_032688496.1 porin OmpA -
  ACGBX2_RS18450 (ACGBX2_18460) matP 3827461..3827913 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  ACGBX2_RS18455 (ACGBX2_18465) - 3828099..3829856 (+) 1758 WP_032688497.1 AAA family ATPase -

Sequence


Protein


Download         Length: 207 a.a.        Molecular weight: 23308.02 Da        Isoelectric Point: 9.7117

>NTDB_id=1077045 ACGBX2_RS18435 WP_032688494.1 3824339..3824962(-) (sxy/tfoX) [Raoultella planticola strain 2024CK-01508]
MKKMSSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKRLQHASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGSQHKNIDLYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1077045 ACGBX2_RS18435 WP_032688494.1 3824339..3824962(-) (sxy/tfoX) [Raoultella planticola strain 2024CK-01508]
ATGAAGAAAATGTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCCACTCCACTCTTGACGATGCGGAAAAATGGTCGCCCGGTCTTACTGAAA
TATTATCAGGTTGACGAGACCCTCTGGGGGGATAGCAAAACGCTTTTCAATCTGTCGGCGTCCTCATTACAAAGTGCACG
CAATGAAAAGCGTCTACAGCATGCGTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAGCTGCTGTTGA
TTAACGCAGGCGTGAGCGATGAAAAAATGCTCCGTCAGTTTGGTGCGGAGAAAGTCTGGTTGAAATTGCGGGAATCAAAC
AAAGCACTTACGTTGAATGTTCTCTATGCGCTGGAAGGGGCTATTGCCGGAGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCAGCCAGCACAAAAATATCGATCTTTACTCGGGTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2X2DYW5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498


Multiple sequence alignment