Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACI3ES_RS10475 Genome accession   NZ_CP174386
Coordinates   2026603..2027970 (-) Length   455 a.a.
NCBI ID   WP_080519300.1    Uniprot ID   -
Organism   Leuconostoc falkenbergense strain SAEED 24451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2021603..2032970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3ES_RS10460 gltX 2022919..2024415 (-) 1497 WP_004911032.1 glutamate--tRNA ligase -
  ACI3ES_RS10465 - 2024513..2025100 (-) 588 WP_114667651.1 TetR/AcrR family transcriptional regulator -
  ACI3ES_RS10470 - 2025231..2026469 (+) 1239 WP_188353953.1 YhgE/Pip domain-containing protein -
  ACI3ES_RS10475 radA 2026603..2027970 (-) 1368 WP_080519300.1 DNA repair protein RadA Machinery gene
  ACI3ES_RS10480 - 2027973..2028833 (-) 861 WP_114667475.1 metallophosphoesterase -
  ACI3ES_RS10485 - 2029007..2029549 (-) 543 WP_114667476.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  ACI3ES_RS10490 - 2029670..2029951 (+) 282 WP_004910985.1 GNAT family N-acetyltransferase -
  ACI3ES_RS10495 rpiA 2029948..2030634 (+) 687 WP_114667477.1 ribose-5-phosphate isomerase RpiA -
  ACI3ES_RS10500 - 2030730..2032160 (+) 1431 WP_080519296.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49066.39 Da        Isoelectric Point: 6.1892

>NTDB_id=1077031 ACI3ES_RS10475 WP_080519300.1 2026603..2027970(-) (radA) [Leuconostoc falkenbergense strain SAEED 24451]
MAKVKTQFICTNCGFVSARYLGRCSNCGEWGTLVEEKIQPETNDRKSRVSLDGRTAKVEKINEVTSEATPRVATQLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQAGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAIKKQ
IESLQPDFVVIDSVQTMQEPDITSAIGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSHYKYRILRAVKNRFGATNELGIFEMRDGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAIAIASSYYDKESQSSDVFIGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGITKPRDIQIVGVATLSEALKIALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1077031 ACI3ES_RS10475 WP_080519300.1 2026603..2027970(-) (radA) [Leuconostoc falkenbergense strain SAEED 24451]
ATCGCTAAAGTTAAAACGCAATTTATATGTACCAATTGTGGGTTTGTATCAGCTCGTTATCTTGGGCGTTGCTCGAATTG
TGGTGAGTGGGGGACATTAGTTGAAGAAAAAATTCAACCAGAAACCAATGATCGCAAGAGCCGTGTCAGCCTTGATGGTC
GAACGGCCAAAGTTGAAAAAATTAACGAAGTGACTTCTGAGGCGACCCCACGGGTGGCAACGCAACTAAAGGAGTTAAAT
CGTGTCCTTGGTGGTGGTGTCGTACCGGGATCAATGGTACTGATTGGTGGCGATCCGGGTATTGGTAAATCAACGTTATT
GCTACAAGTTTCAGGGCAATTGGCGCAAGCGGGTCGTGTTTTGTATGTAACCGGTGAAGAATCTGCGACCCAAGTTAAAT
TGCGCGCTGATCGTTTGGGCGTTGGGCATGACGAATTTTACCTTTATCCGGAAACGGATATGACGGCTATCAAAAAACAA
ATTGAAAGTTTACAGCCGGATTTTGTGGTGATTGATTCGGTTCAAACGATGCAAGAACCAGATATCACGTCTGCCATTGG
CTCGGTCTCACAAATTCGTGAGGTAACGGCTGATTTGCTGCAAATCGCCAAGACTAATAATATTTCCATCTTTATCGTCG
GTCATGTGACCAAAGATGGTGCTATTGCGGGACCAAAAATTTTGGAACACATGGTGGACACGGTATTATATTTTGAAGGT
GATAGTCACTACAAGTACCGTATTCTACGTGCTGTCAAAAACCGTTTTGGGGCGACTAACGAATTAGGTATTTTTGAAAT
GCGAGATGGCGGGCTAATTGAGGTTGCCAATCCTTCTGAAATTTTCCTTGAGGAGCGCTTGGCTGGTGCAACCGGATCGG
CCATCGTGGTGGCATTAGAAGGATCACGCCCAATTTTGGTTGAGCTGCAAGCTTTGGTTACACCGACTGTATTTGGAAAT
GCGCAACGGACCGCGGCTGGATTAGATCGTAACCGTGTGTCACTTATTATGGCTGTACTTGAGAAACGTGCTAATTTGCT
ACTGCAAAATCAAGATGCCTATTTGAAGGCGGCTGGGGGCGTCAAACTTGATGAGCCAGCGATTGATTTGGCAATTGCAA
TTGCGATTGCGAGTTCTTACTATGATAAAGAGTCACAATCTAGTGATGTATTTATTGGTGAAATTGGTTTGACTGGTGAA
GTGCGCAGTGTTGCTGATATTGAAGGGCGTTTAAAGGAAGCAAAAAAGCTTGGCTTCAAACGTGCAATTGTACCAAAAAA
CAATTTAAATGGGATTACCAAGCCACGTGATATTCAAATCGTTGGTGTCGCAACCTTGAGCGAAGCGCTTAAAATTGCGC
TAGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

66.519

99.121

0.659
  radA Streptococcus pneumoniae Rx1

66.519

99.121

0.659
  radA Streptococcus pneumoniae D39

66.519

99.121

0.659
  radA Streptococcus pneumoniae R6

66.519

99.121

0.659
  radA Streptococcus pneumoniae TIGR4

66.519

99.121

0.659
  radA Streptococcus mitis SK321

66.519

99.121

0.659
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

100

0.631

Multiple sequence alignment