Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACIU4M_RS18555 Genome accession   NZ_CP174375
Coordinates   3584484..3584864 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3579484..3589864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS18545 (ACIU4M_18545) - 3581207..3582115 (+) 909 WP_160757649.1 serine protease -
  ACIU4M_RS18550 (ACIU4M_18550) - 3582262..3584256 (+) 1995 WP_047946230.1 glycosyltransferase family 39 protein -
  ACIU4M_RS18555 (ACIU4M_18555) nucA/comI 3584484..3584864 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACIU4M_RS18560 (ACIU4M_18560) - 3585008..3585856 (+) 849 WP_017359585.1 STAS domain-containing protein -
  ACIU4M_RS18565 (ACIU4M_18565) - 3585889..3586431 (-) 543 WP_017359584.1 IseA DL-endopeptidase inhibitor family protein -
  ACIU4M_RS18570 (ACIU4M_18570) - 3586728..3587171 (+) 444 WP_008343821.1 hypothetical protein -
  ACIU4M_RS18575 (ACIU4M_18575) lexA 3587219..3587839 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  ACIU4M_RS18580 (ACIU4M_18580) yneA 3587999..3588310 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  ACIU4M_RS18585 (ACIU4M_18585) - 3588328..3588975 (+) 648 WP_017359583.1 recombinase family protein -
  ACIU4M_RS18590 (ACIU4M_18590) - 3589045..3589275 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=1077007 ACIU4M_RS18555 WP_224559893.1 3584484..3584864(+) (nucA/comI) [Bacillus altitudinis strain SF5]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1077007 ACIU4M_RS18555 WP_224559893.1 3584484..3584864(+) (nucA/comI) [Bacillus altitudinis strain SF5]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556

Multiple sequence alignment