Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACIU4M_RS16865 Genome accession   NZ_CP174375
Coordinates   3239505..3239783 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain SF5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3234505..3244783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS16840 (ACIU4M_16840) - 3234595..3234870 (-) 276 WP_024719551.1 hypothetical protein -
  ACIU4M_RS16845 (ACIU4M_16845) - 3235015..3236634 (+) 1620 WP_007498620.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACIU4M_RS16850 (ACIU4M_16850) - 3236675..3237907 (-) 1233 WP_407708386.1 aminopeptidase -
  ACIU4M_RS16855 (ACIU4M_16855) - 3238015..3238146 (-) 132 WP_003210922.1 protein YkpC -
  ACIU4M_RS16860 (ACIU4M_16860) mreBH 3238221..3239228 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  ACIU4M_RS16865 (ACIU4M_16865) abrB 3239505..3239783 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACIU4M_RS16870 (ACIU4M_16870) - 3239928..3241217 (+) 1290 WP_024719547.1 ATP-binding protein -
  ACIU4M_RS16875 (ACIU4M_16875) - 3241245..3242087 (+) 843 WP_073413361.1 gamma-glutamylcyclotransferase -
  ACIU4M_RS16880 (ACIU4M_16880) - 3242125..3242793 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=1077002 ACIU4M_RS16865 WP_017359400.1 3239505..3239783(+) (abrB) [Bacillus altitudinis strain SF5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1077002 ACIU4M_RS16865 WP_017359400.1 3239505..3239783(+) (abrB) [Bacillus altitudinis strain SF5]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment