Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACIU4M_RS16635 Genome accession   NZ_CP174375
Coordinates   3201010..3201471 (-) Length   153 a.a.
NCBI ID   WP_007498684.1    Uniprot ID   A0A9X0FXQ0
Organism   Bacillus altitudinis strain SF5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3196010..3206471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS16610 (ACIU4M_16610) - 3196413..3197297 (+) 885 WP_039169114.1 cation diffusion facilitator family transporter -
  ACIU4M_RS16615 (ACIU4M_16615) - 3197362..3197517 (-) 156 WP_155720694.1 hypothetical protein -
  ACIU4M_RS16620 (ACIU4M_16620) - 3197815..3198354 (+) 540 WP_058337409.1 RDD family protein -
  ACIU4M_RS16625 (ACIU4M_16625) - 3198480..3199790 (+) 1311 WP_172793309.1 MFS transporter -
  ACIU4M_RS16630 (ACIU4M_16630) - 3199864..3200772 (+) 909 WP_024719666.1 chemotaxis protein -
  ACIU4M_RS16635 (ACIU4M_16635) kre 3201010..3201471 (-) 462 WP_007498684.1 YkyB family protein Regulator
  ACIU4M_RS16640 (ACIU4M_16640) - 3201949..3202164 (-) 216 WP_058337408.1 hypothetical protein -
  ACIU4M_RS16645 (ACIU4M_16645) - 3202330..3202506 (+) 177 WP_172793301.1 hypothetical protein -
  ACIU4M_RS16650 (ACIU4M_16650) - 3202574..3203851 (-) 1278 WP_008348012.1 MFS transporter -
  ACIU4M_RS16655 (ACIU4M_16655) - 3203925..3204422 (-) 498 WP_073414335.1 L,D-transpeptidase family protein -
  ACIU4M_RS16660 (ACIU4M_16660) - 3204579..3205436 (-) 858 WP_268356707.1 metallophosphoesterase -
  ACIU4M_RS16665 (ACIU4M_16665) fadH 3205576..3206340 (+) 765 WP_019743904.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17739.31 Da        Isoelectric Point: 10.2617

>NTDB_id=1077000 ACIU4M_RS16635 WP_007498684.1 3201010..3201471(-) (kre) [Bacillus altitudinis strain SF5]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPRYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1077000 ACIU4M_RS16635 WP_007498684.1 3201010..3201471(-) (kre) [Bacillus altitudinis strain SF5]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAGATATAGTCAACAACAGTCCGACGTGCTGATTGAAATCGGAGAT
TATTATTTTCATCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAATCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACAAAACCCGTCTTCAAACGGCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment