Detailed information NTG1076999

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACIU4M_RS16470
• Genome accession: NZ_CP174375
• Coordinates: 3164215..3166320 (-)
• Length: 701 a.a.
• NCBI ID: WP_039169142.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain SF5
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 3159215..3171320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIU4M_RS16445 (ACIU4M_16445)	-	3159612..3159854 (+)	243	WP_008346101.1	aspartyl-phosphate phosphatase Spo0E family protein	-
ACIU4M_RS16450 (ACIU4M_16450)	-	3159906..3161405 (-)	1500	WP_008346092.1	ATP-binding protein	-
ACIU4M_RS16455 (ACIU4M_16455)	-	3161610..3162065 (+)	456	WP_003211701.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACIU4M_RS16460 (ACIU4M_16460)	motB	3162098..3162865 (-)	768	WP_024719648.1	flagellar motor protein MotB	-
ACIU4M_RS16465 (ACIU4M_16465)	motA	3162858..3163652 (-)	795	WP_008346088.1	flagellar motor stator protein MotA	-
ACIU4M_RS16470 (ACIU4M_16470)	clpC	3164215..3166320 (-)	2106	WP_039169142.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
ACIU4M_RS16475 (ACIU4M_16475)	-	3166566..3167609 (+)	1044	WP_039169140.1	membrane protein	-
ACIU4M_RS16480 (ACIU4M_16480)	queC	3167885..3168541 (+)	657	WP_008348090.1	7-cyano-7-deazaguanine synthase QueC	-
ACIU4M_RS16485 (ACIU4M_16485)	queD	3168542..3168982 (+)	441	WP_039169139.1	6-carboxytetrahydropterin synthase QueD	-
ACIU4M_RS16490 (ACIU4M_16490)	queE	3168975..3169706 (+)	732	WP_019743916.1	7-carboxy-7-deazaguanine synthase QueE	-
ACIU4M_RS16495 (ACIU4M_16495)	queF	3169722..3170219 (+)	498	WP_003211403.1	preQ(1) synthase	-
ACIU4M_RS16500 (ACIU4M_16500)	-	3170478..3170696 (+)	219	WP_017367128.1	hypothetical protein	-
ACIU4M_RS16505 (ACIU4M_16505)	-	3170821..3171009 (-)	189	WP_003211747.1	DUF2187 family protein	-

Sequence

Protein

• Length: 701 a.a.
• Molecular weight: 78176.77 Da
• Isoelectric Point: 5.1807

>NTDB_id=1076999 ACIU4M_RS16470 WP_039169142.1 3164215..3166320(-) (clpC) [Bacillus altitudinis strain SF5]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide

• Length: 2106 bp

>NTDB_id=1076999 ACIU4M_RS16470 WP_039169142.1 3164215..3166320(-) (clpC) [Bacillus altitudinis strain SF5]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGGGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAAGAACGGATGAAGCAATTGATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAGTATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCTGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGCATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATTGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTACAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTATTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAATACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGTCGTCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCGGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCGCTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTACCATCCAGCATTTGGAGCTCGTCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGATATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA lid domain (AAA_lid_9) (253-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (611-686)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-605)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.969	100	0.601
clpE	Streptococcus mutans UA159	56.51	100	0.601
clpE	Streptococcus pneumoniae Rx1	55.846	100	0.579
clpE	Streptococcus pneumoniae D39	55.846	100	0.579
clpE	Streptococcus pneumoniae R6	55.846	100	0.579
clpE	Streptococcus pneumoniae TIGR4	55.846	100	0.579
clpC	Bacillus subtilis subsp. subtilis str. 168	53.651	95.72	0.514
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.855	90.728	0.425
clpC	Streptococcus thermophilus LMD-9	44.427	92.154	0.409
clpC	Streptococcus thermophilus LMG 18311	44.272	92.154	0.408
clpC	Streptococcus pneumoniae TIGR4	44.479	90.442	0.402
clpC	Streptococcus pneumoniae Rx1	44.674	89.729	0.401
clpC	Streptococcus pneumoniae D39	44.674	89.729	0.401
clpC	Streptococcus mutans UA159	44.127	89.872	0.397