Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACIU4M_RS15590 Genome accession   NZ_CP174375
Coordinates   3010510..3012336 (+) Length   608 a.a.
NCBI ID   WP_337678309.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005510..3017336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS15570 (ACIU4M_15570) - 3005772..3006437 (-) 666 WP_007499010.1 TerC family protein -
  ACIU4M_RS15575 (ACIU4M_15575) mecA 3006702..3007367 (+) 666 WP_008348474.1 adaptor protein MecA Regulator
  ACIU4M_RS15580 (ACIU4M_15580) cls 3007453..3008973 (+) 1521 WP_407708347.1 cardiolipin synthase -
  ACIU4M_RS15585 (ACIU4M_15585) - 3009135..3010295 (+) 1161 WP_024720123.1 competence protein CoiA -
  ACIU4M_RS15590 (ACIU4M_15590) pepF 3010510..3012336 (+) 1827 WP_337678309.1 oligoendopeptidase F Regulator
  ACIU4M_RS15595 (ACIU4M_15595) - 3012624..3012797 (-) 174 WP_008348466.1 hypothetical protein -
  ACIU4M_RS15600 (ACIU4M_15600) - 3013094..3014005 (-) 912 WP_007499002.1 ClpXP adapter SpxH family protein -
  ACIU4M_RS15605 (ACIU4M_15605) - 3014002..3014400 (-) 399 WP_007499001.1 thiol management oxidoreductase -
  ACIU4M_RS15610 (ACIU4M_15610) - 3014678..3015442 (-) 765 WP_008348461.1 lytic transglycosylase domain-containing protein -
  ACIU4M_RS15615 (ACIU4M_15615) - 3015468..3016043 (-) 576 WP_007498999.1 CYTH domain-containing protein -
  ACIU4M_RS15620 (ACIU4M_15620) - 3016261..3016626 (+) 366 WP_407708831.1 hypothetical protein -
  ACIU4M_RS15625 (ACIU4M_15625) - 3016660..3017289 (+) 630 WP_008348457.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70283.90 Da        Isoelectric Point: 5.2150

>NTDB_id=1076996 ACIU4M_RS15590 WP_337678309.1 3010510..3012336(+) (pepF) [Bacillus altitudinis strain SF5]
MTSQNNNNHLPDRSEVKEENKWRLEDIFESVDSWNKEFEAVKKEIPKLAQFKGKLAHSADVLYEALTFQDQLSEKLGKLY
TYAHMKYDEDTTNSSFQALNDKASNLFTQLSSTSAYIVPEILSIQEDKLQQFILEKEELKLYSHALEEINKERPHILSEE
QEALLAEASEPLSTSSTTFSMFNNADISFPSVKDENGEEKKITHGNFITFLNSDDREVRKNAFKAVYKTYDQYQNTLAST
LSGSIKKDNFYAKVRHYKSAREAALSRNSIPEEVYDNLIDTVHQYLPLLHRYIELRKKVLKLDEVHNYDLYTPLVKDAGM
KLTYDEAKDYMLKGLAPLGEEYVSVLKEGLENRWVDVYENKGKRSGAYSSGSYGTNPYILMNWQNNIDNLFTLAHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNHLEDKKQRLYVLNHLLEGFRGTVFRQTMFAEFEHLIHVKAQ
EGEALTPEFMTNLYYDLNKKYFGDGMVVDKEIGLEWTRIPHFYYNYYVYQYATGYSAAQALSKQILEEGKPAVERYTDFL
KAGSSDYPINVLKKAGVDMASKEPIEAACQLFEEKLKEMEELISKTGE

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1076996 ACIU4M_RS15590 WP_337678309.1 3010510..3012336(+) (pepF) [Bacillus altitudinis strain SF5]
ATGACTTCACAAAATAACAACAATCATTTACCAGACAGAAGCGAAGTAAAAGAAGAAAACAAATGGCGCCTTGAAGATAT
TTTTGAAAGTGTCGATTCTTGGAATAAGGAATTCGAAGCTGTAAAAAAAGAAATTCCGAAGCTCGCCCAATTTAAAGGCA
AGCTGGCCCATTCTGCTGATGTCTTGTATGAAGCCCTAACATTTCAGGATCAACTTTCTGAAAAACTTGGCAAGCTTTAT
ACATATGCGCACATGAAATACGATGAAGATACAACAAATTCATCATTTCAGGCTTTAAATGATAAAGCATCCAATTTATT
TACACAGCTGTCTAGTACATCTGCCTATATTGTTCCGGAAATTTTATCTATTCAAGAAGATAAGTTGCAGCAATTTATTT
TGGAAAAAGAAGAATTAAAACTTTATTCTCACGCTCTCGAAGAAATTAACAAAGAGCGTCCGCATATTTTAAGTGAGGAG
CAAGAAGCTTTATTAGCTGAAGCCTCTGAACCTTTATCAACATCATCCACTACGTTTAGTATGTTTAATAATGCAGATAT
TTCGTTCCCTTCTGTTAAGGATGAAAATGGAGAAGAAAAGAAAATTACTCATGGCAACTTCATTACCTTTTTAAACAGTG
ATGATCGTGAAGTGAGAAAGAATGCTTTTAAAGCCGTTTATAAAACGTATGATCAATATCAGAATACTTTGGCGTCTACA
CTCAGTGGCTCGATTAAAAAGGATAATTTTTATGCGAAAGTACGTCATTACAAATCTGCAAGAGAAGCAGCGTTATCACG
CAACAGTATTCCTGAAGAAGTGTATGACAATCTAATTGATACAGTTCATCAATATTTACCGTTATTACACCGCTACATTG
AATTGCGTAAAAAGGTATTAAAGCTTGATGAAGTGCACAATTATGACTTGTATACACCATTAGTAAAAGATGCTGGCATG
AAGCTGACCTATGATGAAGCAAAGGATTATATGCTGAAAGGGTTAGCGCCATTAGGAGAAGAATATGTTTCGGTATTAAA
AGAGGGACTCGAAAATCGCTGGGTAGACGTTTATGAGAATAAAGGGAAACGAAGCGGTGCGTATTCTTCTGGAAGCTATG
GTACGAATCCTTATATCTTAATGAACTGGCAAAATAATATTGATAATTTATTTACACTGGCTCATGAATTTGGTCACTCT
GTTCATAGCTACTATACAAGAAAGCATCAGCCATATCCGTACGGAAACTACAGCATTTTTGTAGCGGAAGTAGCTTCTAC
AACAAATGAAGCATTACTAGGTGAATACTTACTGAATCATTTAGAGGACAAAAAGCAGCGCTTGTATGTGCTCAATCATT
TGTTAGAAGGATTTAGAGGGACGGTATTCAGACAAACGATGTTTGCAGAGTTCGAGCACCTGATTCATGTGAAAGCGCAA
GAAGGGGAGGCATTAACGCCAGAGTTTATGACGAACCTGTATTACGACCTGAATAAGAAGTATTTTGGCGACGGTATGGT
TGTGGATAAGGAAATCGGATTAGAATGGACGCGAATTCCGCATTTCTATTACAACTATTATGTGTATCAATATGCGACAG
GCTATAGTGCGGCTCAGGCATTAAGTAAACAAATTTTAGAAGAAGGGAAACCTGCGGTGGAGCGCTATACAGACTTCCTT
AAAGCAGGAAGCTCTGACTATCCAATCAACGTGCTGAAAAAAGCTGGTGTAGATATGGCATCGAAAGAGCCAATTGAGGC
AGCATGTCAATTGTTTGAAGAAAAATTAAAGGAAATGGAAGAGCTCATCTCAAAGACTGGTGAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

97.697

0.482

Multiple sequence alignment