Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACIU4M_RS11780 Genome accession   NZ_CP174375
Coordinates   2219060..2219488 (-) Length   142 a.a.
NCBI ID   WP_058336347.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2214060..2224488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS11750 (ACIU4M_11750) - 2214204..2214533 (+) 330 WP_024718960.1 YckD family protein -
  ACIU4M_RS11755 (ACIU4M_11755) - 2214580..2215344 (-) 765 WP_407708192.1 MBL fold metallo-hydrolase -
  ACIU4M_RS11760 (ACIU4M_11760) - 2215460..2215879 (+) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  ACIU4M_RS11765 (ACIU4M_11765) - 2215904..2216710 (+) 807 WP_024718957.1 aminoglycoside N(3)-acetyltransferase -
  ACIU4M_RS11770 (ACIU4M_11770) comJ 2216712..2217098 (-) 387 WP_039166300.1 competence protein ComJ -
  ACIU4M_RS11775 (ACIU4M_11775) - 2217236..2218933 (-) 1698 WP_259254049.1 methyl-accepting chemotaxis protein -
  ACIU4M_RS11780 (ACIU4M_11780) nucA/comI 2219060..2219488 (-) 429 WP_058336347.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACIU4M_RS11785 (ACIU4M_11785) - 2219857..2221926 (+) 2070 WP_407708193.1 hydantoinase/oxoprolinase family protein -
  ACIU4M_RS11790 (ACIU4M_11790) - 2221916..2223901 (+) 1986 WP_144668204.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15912.88 Da        Isoelectric Point: 6.4881

>NTDB_id=1076981 ACIU4M_RS11780 WP_058336347.1 2219060..2219488(-) (nucA/comI) [Bacillus altitudinis strain SF5]
MKLLKTILLLLLIVIGVATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1076981 ACIU4M_RS11780 WP_058336347.1 2219060..2219488(-) (nucA/comI) [Bacillus altitudinis strain SF5]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACTGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGTGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment