Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACIU4M_RS09820 Genome accession   NZ_CP174375
Coordinates   1850800..1851912 (+) Length   370 a.a.
NCBI ID   WP_024718424.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845800..1856912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS09795 (ACIU4M_09795) rnpA 1846551..1846910 (-) 360 WP_008347592.1 ribonuclease P protein component -
  ACIU4M_RS09800 (ACIU4M_09800) rpmH 1846989..1847123 (-) 135 WP_008360908.1 50S ribosomal protein L34 -
  ACIU4M_RS09805 (ACIU4M_09805) dnaA 1847744..1849084 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  ACIU4M_RS09810 (ACIU4M_09810) dnaN 1849281..1850417 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  ACIU4M_RS09815 (ACIU4M_09815) yaaA 1850568..1850783 (+) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  ACIU4M_RS09820 (ACIU4M_09820) recF 1850800..1851912 (+) 1113 WP_024718424.1 DNA replication/repair protein RecF Machinery gene
  ACIU4M_RS09825 (ACIU4M_09825) remB 1851930..1852175 (+) 246 WP_024718423.1 extracellular matrix regulator RemB -
  ACIU4M_RS09830 (ACIU4M_09830) gyrB 1852233..1854149 (+) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACIU4M_RS09835 (ACIU4M_09835) gyrA 1854384..1856888 (+) 2505 WP_017359864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42546.60 Da        Isoelectric Point: 7.1297

>NTDB_id=1076976 ACIU4M_RS09820 WP_024718424.1 1850800..1851912(+) (recF) [Bacillus altitudinis strain SF5]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1076976 ACIU4M_RS09820 WP_024718424.1 1850800..1851912(+) (recF) [Bacillus altitudinis strain SF5]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTATTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGG
AATCATTACTTGAAACAACTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835

Multiple sequence alignment