Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACIU4M_RS07125 Genome accession   NZ_CP174375
Coordinates   1304066..1305445 (-) Length   459 a.a.
NCBI ID   WP_407708815.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1299066..1310445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS07090 (ACIU4M_07090) flgL 1299249..1300160 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  ACIU4M_RS07095 (ACIU4M_07095) flgK 1300169..1301689 (-) 1521 WP_024719239.1 flagellar hook-associated protein FlgK -
  ACIU4M_RS07100 (ACIU4M_07100) - 1301705..1302187 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ACIU4M_RS07105 (ACIU4M_07105) flgM 1302206..1302469 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACIU4M_RS07110 (ACIU4M_07110) - 1302549..1302968 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ACIU4M_RS07115 (ACIU4M_07115) - 1303025..1303747 (-) 723 WP_407708705.1 ComF family protein -
  ACIU4M_RS07120 (ACIU4M_07120) - 1303708..1304001 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  ACIU4M_RS07125 (ACIU4M_07125) comFA 1304066..1305445 (-) 1380 WP_407708815.1 DEAD/DEAH box helicase Machinery gene
  ACIU4M_RS07130 (ACIU4M_07130) - 1305565..1306407 (-) 843 WP_024719242.1 DegV family protein -
  ACIU4M_RS07135 (ACIU4M_07135) degU 1306619..1307308 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACIU4M_RS07140 (ACIU4M_07140) degS 1307373..1308548 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  ACIU4M_RS07145 (ACIU4M_07145) - 1308770..1309438 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52520.14 Da        Isoelectric Point: 9.9985

>NTDB_id=1076968 ACIU4M_RS07125 WP_407708815.1 1304066..1305445(-) (comFA) [Bacillus altitudinis strain SF5]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKYVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFSESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1076968 ACIU4M_RS07125 WP_407708815.1 1304066..1305445(-) (comFA) [Bacillus altitudinis strain SF5]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCTGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTATGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTAGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAATATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTACCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGGT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACGATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTTCAGAAAGTGCCCTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment