Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACIU4M_RS00970 Genome accession   NZ_CP174375
Coordinates   153076..153711 (+) Length   211 a.a.
NCBI ID   WP_041507036.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 148076..158711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS00930 (ACIU4M_00930) - 148240..149358 (+) 1119 WP_024718533.1 NADH-dependent flavin oxidoreductase -
  ACIU4M_RS00935 (ACIU4M_00935) - 149408..149914 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  ACIU4M_RS00940 (ACIU4M_00940) - 150083..150502 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  ACIU4M_RS00945 (ACIU4M_00945) - 150524..150976 (-) 453 WP_017359729.1 YppG family protein -
  ACIU4M_RS00950 (ACIU4M_00950) - 151085..151465 (-) 381 WP_225310452.1 YppE family protein -
  ACIU4M_RS00955 (ACIU4M_00955) - 151515..151751 (-) 237 WP_024718530.1 DUF5446 family protein -
  ACIU4M_RS00960 (ACIU4M_00960) sspM 151945..152049 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  ACIU4M_RS00965 (ACIU4M_00965) - 152073..153029 (-) 957 WP_407708553.1 DUF2515 domain-containing protein -
  ACIU4M_RS00970 (ACIU4M_00970) recU 153076..153711 (+) 636 WP_041507036.1 Holliday junction resolvase RecU Machinery gene
  ACIU4M_RS00975 (ACIU4M_00975) - 153731..156424 (+) 2694 WP_217967038.1 PBP1A family penicillin-binding protein -
  ACIU4M_RS00980 (ACIU4M_00980) - 156460..156969 (-) 510 WP_217967037.1 YpoC family protein -
  ACIU4M_RS00985 (ACIU4M_00985) nth 156966..157628 (-) 663 WP_008344602.1 endonuclease III -
  ACIU4M_RS00990 (ACIU4M_00990) - 157646..158350 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24288.52 Da        Isoelectric Point: 9.6582

>NTDB_id=1076947 ACIU4M_RS00970 WP_041507036.1 153076..153711(+) (recU) [Bacillus altitudinis strain SF5]
MIRYPNGKSYQPIQQIGTKKRSSGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1076947 ACIU4M_RS00970 WP_041507036.1 153076..153711(+) (recU) [Bacillus altitudinis strain SF5]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAAGCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGACGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGCAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697

Multiple sequence alignment