Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACJG84_RS03815 Genome accession   NZ_CP174373
Coordinates   890388..891749 (-) Length   453 a.a.
NCBI ID   WP_412464894.1    Uniprot ID   -
Organism   Flavobacterium sp. TBRC 19032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 885388..896749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJG84_RS03795 - 885960..886319 (+) 360 WP_409675635.1 helix-turn-helix domain-containing protein -
  ACJG84_RS03800 - 886322..886945 (-) 624 WP_409675638.1 murein L,D-transpeptidase catalytic domain-containing protein -
  ACJG84_RS03805 - 886949..888322 (-) 1374 WP_412464892.1 PQQ-dependent sugar dehydrogenase -
  ACJG84_RS03810 - 888374..890326 (-) 1953 WP_412464893.1 transglycosylase domain-containing protein -
  ACJG84_RS03815 radA 890388..891749 (-) 1362 WP_412464894.1 DNA repair protein RadA Machinery gene
  ACJG84_RS03820 - 891749..893014 (-) 1266 WP_409675650.1 alpha/beta hydrolase-fold protein -
  ACJG84_RS03825 - 893070..894035 (-) 966 WP_409675653.1 YbhN family protein -
  ACJG84_RS03830 panD 894039..894389 (-) 351 WP_290872115.1 aspartate 1-decarboxylase -
  ACJG84_RS03835 panC 894404..895252 (-) 849 WP_412464895.1 pantoate--beta-alanine ligase -
  ACJG84_RS03840 - 895358..896164 (+) 807 WP_409675659.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50018.60 Da        Isoelectric Point: 6.4073

>NTDB_id=1076933 ACJG84_RS03815 WP_412464894.1 890388..891749(-) (radA) [Flavobacterium sp. TBRC 19032]
MSKLKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKEEKTSWKPTATENKRVSKPLKIKEIDATQEVRMDTTDSEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERINPNSENCLILTETKTQNIFRHI
VEVEPDIVIIDSIQTLHTDHIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMQGSGLREVSNPSEILISHREEELSGTAIASTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIAVGKDVCFAGEVGLSGEI
RPVNRVEQRIQEAEKLGFATIFVSKYNKIAVKNPLIKIVLVSKIEEVVEQLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1076933 ACJG84_RS03815 WP_412464894.1 890388..891749(-) (radA) [Flavobacterium sp. TBRC 19032]
ATGTCTAAACTCAAAACGTCTTTCTTTTGTCAAAATTGCGGCACTCAATACGCCAAATGGCAAGGGCAATGCAATGCTTG
TAAAGAATGGAATACCATAGCGGAGGAAATTATTCAAAAAGAAGAAAAAACAAGTTGGAAACCTACCGCAACCGAAAACA
AAAGGGTTTCCAAACCCTTGAAAATAAAAGAAATTGATGCAACGCAGGAAGTCCGCATGGACACTACTGACAGTGAATTG
AACCGTGTGCTCGGTGGCGGCATCGTTCCCGGCTCATTGATTCTTTTGGGAGGTGAACCCGGTATTGGAAAGAGTACATT
ACTGCTTCAAATTTCACTAAAATTACCTTATAAAACACTTTATGTTTCGGGCGAGGAAAGTCAGAAACAAATCAAAATGC
GTGCGGAACGCATCAACCCCAACAGTGAAAACTGCTTAATTTTAACCGAAACCAAAACCCAAAACATCTTCCGACATATA
GTGGAAGTGGAACCGGATATAGTGATTATTGATTCCATTCAAACCCTGCATACCGACCATATAGAATCGACTGCCGGAAG
CATTTCTCAAATTCGGGAAACTACGGCTGAATTAATCAAATTTGCCAAGGAAACCAATATCCCGGTCATCCTGATTGGTC
ATATCACTAAAGACGGCAACATAGCCGGACCTAAGATTTTGGAACATATGGTGGACACCGTTTTACAATTTGAAGGCGAC
CGAAACCACGTTTACCGCATTTTGCGCTCGCTTAAAAACCGTTTTGGTTCTACAGCCGAATTGGGAATCTATGAAATGCA
AGGTTCCGGTCTAAGAGAGGTATCAAATCCTTCAGAAATACTAATCTCTCATAGAGAAGAGGAGCTTTCGGGCACTGCCA
TTGCCTCCACCCTAGAGGGCATGCGTCCGTTAATGATAGAAATTCAGGCGCTGGTTTCCACAGCGGTTTACGGAACGCCA
CAACGCAGTACCACAGGCTATAACGCCAAACGATTGAACATGATTTTGGCCGTTTTAGAAAAACGCGCCGGTTTTCGCTT
GGGCACCAAGGACGTCTTCCTAAATGTAACGGGAGGAATCTCGGTAGATGATCCGGCAATTGATTTGGCCGTTGTGGCAG
CCATTTTATCTTCCAACGAAGATATAGCGGTAGGGAAAGATGTTTGTTTTGCAGGAGAAGTAGGCTTGTCGGGGGAAATC
CGCCCGGTAAACCGTGTAGAACAACGTATACAAGAAGCTGAAAAACTGGGCTTCGCCACTATATTTGTTTCTAAGTACAA
TAAAATTGCCGTCAAAAATCCGCTGATTAAAATCGTTTTAGTTTCCAAAATTGAAGAAGTGGTTGAGCAATTGTTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.571

100

0.488
  radA Streptococcus mitis SK321

48.571

100

0.488
  radA Streptococcus mitis NCTC 12261

48.571

100

0.488
  radA Streptococcus pneumoniae TIGR4

48.571

100

0.488
  radA Streptococcus pneumoniae D39

48.571

100

0.488
  radA Streptococcus pneumoniae R6

48.571

100

0.488
  radA Bacillus subtilis subsp. subtilis str. 168

47.921

100

0.483

Multiple sequence alignment