Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH36K_RS05300 Genome accession   NZ_CP174370
Coordinates   1117919..1118854 (+) Length   311 a.a.
NCBI ID   WP_411169914.1    Uniprot ID   -
Organism   Clostridium sp. MB05     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1112919..1123854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH36K_RS05280 (ACH36K_05280) - 1114255..1115229 (-) 975 WP_411169910.1 methyl-accepting chemotaxis protein -
  ACH36K_RS05285 (ACH36K_05285) - 1115231..1115956 (-) 726 WP_411169911.1 DUF2225 domain-containing protein -
  ACH36K_RS05290 (ACH36K_05290) - 1116121..1116915 (+) 795 WP_411169912.1 GTP pyrophosphokinase family protein -
  ACH36K_RS05295 (ACH36K_05295) - 1117034..1117738 (-) 705 WP_411169913.1 exosporium glycoprotein BclB-related protein -
  ACH36K_RS05300 (ACH36K_05300) ceuB 1117919..1118854 (+) 936 WP_411169914.1 ABC transporter permease Machinery gene
  ACH36K_RS05305 (ACH36K_05305) - 1118854..1119807 (+) 954 WP_411169915.1 iron chelate uptake ABC transporter family permease subunit -
  ACH36K_RS05310 (ACH36K_05310) - 1119804..1120559 (+) 756 WP_411169916.1 ABC transporter ATP-binding protein -
  ACH36K_RS05315 (ACH36K_05315) - 1120601..1121548 (+) 948 WP_411169917.1 siderophore ABC transporter substrate-binding protein -
  ACH36K_RS05320 (ACH36K_05320) - 1121809..1122357 (+) 549 WP_411168699.1 NADH peroxidase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33956.04 Da        Isoelectric Point: 10.1877

>NTDB_id=1076910 ACH36K_RS05300 WP_411169914.1 1117919..1118854(+) (ceuB) [Clostridium sp. MB05]
MTKKSLIATTIILSVISLFVGVSDINFFNIGAEEIEVLMISRIPRVLSILVAGIGMSISGVIMQQISNNKFISPTTAATV
DSAKLGVLFSLIVFNSATIMQKMFLSFVFAIIGTFIFMAILKKIKFKNVIFIPLVGIMLGNVIGSITDFFAFKYNLTQNI
GAFMQGSFSSVIKGNYEILYLSIPLVIIAFSYVHKFTLAGMGEEMSVSLGLNYKRVTNIGVILVALISALVVITVGNIPF
IGLIIPNIVSIWKGDNLKNNMPLVALLGSSFLLACDILSRLIIFPYEIPIDLTVGVIGGIIFLYLIFRRNK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=1076910 ACH36K_RS05300 WP_411169914.1 1117919..1118854(+) (ceuB) [Clostridium sp. MB05]
ATGACTAAGAAATCTTTAATAGCAACTACTATTATATTATCAGTAATATCTCTATTTGTTGGAGTATCAGATATTAATTT
TTTTAATATAGGAGCAGAAGAAATAGAAGTGCTTATGATAAGTAGGATACCTAGGGTGTTAAGCATATTAGTAGCCGGAA
TAGGAATGAGCATTAGTGGAGTTATAATGCAGCAAATAAGTAATAATAAATTTATTTCGCCAACAACAGCAGCGACAGTT
GATTCGGCTAAGCTTGGAGTTTTATTTTCATTAATAGTGTTCAACTCAGCTACCATAATGCAAAAAATGTTTTTATCTTT
TGTATTTGCAATAATAGGTACTTTTATTTTTATGGCAATACTTAAAAAAATAAAATTTAAAAATGTAATTTTTATTCCAT
TAGTAGGTATAATGCTCGGAAATGTAATAGGCTCAATAACAGATTTCTTTGCATTCAAATACAACTTAACTCAAAATATT
GGAGCTTTTATGCAAGGTAGTTTCTCATCAGTAATAAAGGGAAACTATGAAATATTGTACTTGAGTATTCCATTGGTAAT
AATTGCTTTTTCATATGTACATAAGTTTACATTAGCAGGTATGGGGGAAGAGATGTCAGTTAGCCTTGGGCTAAACTACA
AAAGAGTAACTAATATAGGAGTTATATTAGTTGCATTAATATCAGCTTTAGTTGTAATAACAGTTGGAAATATCCCATTT
ATAGGACTTATTATCCCTAATATTGTATCTATTTGGAAAGGGGACAACTTAAAAAATAATATGCCTTTAGTTGCACTTTT
AGGATCTAGCTTTTTATTAGCATGTGATATATTAAGTCGTTTAATAATTTTCCCTTATGAAATACCAATAGATTTAACAG
TTGGGGTAATTGGTGGAATAATATTCCTTTATCTAATATTTAGGAGGAATAAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.923

100

0.482

Multiple sequence alignment