Detailed information NTG0107684

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: NELON_RS04085
• Genome accession: NZ_CP007726
• Coordinates: 829594..832167 (-)
• Length: 857 a.a.
• NCBI ID: WP_003772329.1
• Uniprot ID: D4DRB3
• Organism: Neisseria elongata subsp. glycolytica ATCC 29315
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 824594..837167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NELON_RS04065 (NELON_04275)	-	825327..826244 (-)	918	WP_003772319.1	BPSS1780 family membrane protein	-
NELON_RS04070 (NELON_04280)	trmA	826318..827412 (-)	1095	WP_003772320.1	tRNA (uridine(54)-C5)-methyltransferase TrmA	-
NELON_RS04075 (NELON_04285)	-	827572..827760 (+)	189	WP_003772322.1	hypothetical protein	-
NELON_RS04080 (NELON_04290)	dnaG	827757..829526 (+)	1770	WP_041961334.1	DNA primase	-
NELON_RS04085 (NELON_04295)	clpC	829594..832167 (-)	2574	WP_003772329.1	ATP-dependent chaperone ClpB	Regulator
NELON_RS04090 (NELON_04300)	-	832347..832784 (+)	438	WP_003772331.1	peroxiredoxin	-
NELON_RS04095 (NELON_04305)	xerD	832790..833662 (+)	873	WP_003772333.1	site-specific tyrosine recombinase XerD	-
NELON_RS04100 (NELON_04310)	ribBA	833765..835096 (+)	1332	WP_003772334.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
NELON_RS04105 (NELON_04320)	-	835229..835648 (-)	420	WP_049253979.1	Spy/CpxP family protein refolding chaperone	-
NELON_RS04110 (NELON_04330)	rpe	835942..836625 (+)	684	WP_040665850.1	ribulose-phosphate 3-epimerase	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 94772.02 Da
• Isoelectric Point: 5.1493

>NTDB_id=107684 NELON_RS04085 WP_003772329.1 829594..832167(-) (clpC) [Neisseria elongata subsp. glycolytica ATCC 29315]
MRFDKLTAKFQQAIAEAQSLALAADSSYLEAGFVLKALLDDQNSGAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGD
ILPSRELQAVLNLMDKAATKRGDAYIASELFLLALVQQNDATGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLRNKRLLVL
DLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIFIDEIHTLVGAGKTDGAMDAGNMLKPALARGELHCIGATTLDEYR
QYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAASR
IKMELDSKPEQMDKLDRRIIQLKMEKMHVAKESDDASKKRLELIDEEIDGLQKEYADLDEIWKAEKAASSSTADIKKQMD
DIKVKIEQAKRQGDFARASELEYGELPKLGAQLQAAESNPDGKKQNKLFRTEVGADEVAEIVSRMTGIPVSKMMEGERDK
LLKMEEVLHRRVVGQDEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSEYM
EKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTS
NIGSQHIQQMGTQDYEAVKEAVMEEVKAYFRPEMINRIDEVVVFHGLNQENIRNIAKIQLKGLEKRLEAQHLHLKVDDAA
LDLIAEAGFDPVYGARPLKRAIQSEIENPLAKALLEGKYAPDSTIHVKEEGGKLVFA

Nucleotide

• Length: 2574 bp

>NTDB_id=107684 NELON_RS04085 WP_003772329.1 829594..832167(-) (clpC) [Neisseria elongata subsp. glycolytica ATCC 29315]
ATGAGATTCGACAAATTAACCGCCAAATTCCAACAAGCTATTGCAGAAGCTCAGAGTTTGGCATTGGCTGCGGACAGCAG
CTATCTGGAAGCAGGCTTCGTGCTGAAAGCCCTGCTTGACGACCAAAACAGCGGAGCCGCCGCGCTCTTGGCTCATGCGG
GCGTGAATGTGCCACAGGTGAAACAGCGTTTGCAGCAGCATTTAAACAGCCTGCCGAAAGTGTCCGGCCAGGGCGGCGAT
ATTCTGCCCAGCCGCGAATTGCAGGCGGTGTTGAACCTGATGGACAAAGCGGCAACCAAGCGCGGCGATGCCTATATCGC
CAGCGAACTTTTTCTGCTTGCCTTGGTACAGCAGAACGATGCGACCGGCAAAATCCTGAAAGAAGCCGGCGCGACCGAAC
AAAATATCAATGCCGCGATTGACGCGGTACGAGGAGGACAAAACGTGAACGATGCCAATGCCGAAGACCAACGCGATGCT
CTGAAAAAATACACGCTCGACCTGACACAGCGCGCCCGCGACGGCAAACTTGACCCCGTTATCGGCCGCGACGACGAAAT
CCGCCGCGCGATTCAGGTGCTGCAACGCCGCACCAAAAACAACCCTGTGCTGATCGGTGAGCCGGGTGTGGGTAAAACCG
CCATTGTCGAAGGTTTGGCGCAACGTATCGTCAACGGCGAAGTGCCTGAATCCCTGCGTAACAAACGCCTGCTGGTTTTG
GATTTGGCGGCATTGATTGCCGGCGCGAAATACCGCGGCGAATTTGAAGAACGCTTGAAAGGCGTGTTGAACGATTTGGC
GAAAGACGACGGCAACACCCTGATTTTCATCGACGAAATCCATACTTTGGTCGGCGCGGGCAAAACCGACGGCGCGATGG
ACGCAGGCAATATGTTGAAACCGGCTTTGGCGCGCGGCGAACTGCACTGTATCGGCGCGACCACCTTGGACGAATACCGC
CAATACATCGAAAAAGACGCGGCACTCGAACGCCGCTTCCAAAAAGTATTGGTCGGCGAACCCAGCGTGGAAGACACCAT
CGCCATCTTGCGCGGCTTGCAGGAACGCTATGAAATCCACCACGGCATCGACATCACCGACCCCGCCATCGTTGCCGCCG
CAGAATTGAGCGATCGTTACATCACCGACCGCTTCCTGCCCGACAAAGCGATTGATTTGATTGACGAAGCCGCCAGCCGT
ATCAAAATGGAGCTGGACAGCAAACCTGAGCAGATGGACAAACTCGACCGCCGCATCATCCAGCTCAAAATGGAAAAAAT
GCACGTTGCCAAAGAAAGCGACGACGCCAGCAAAAAACGTTTGGAGCTGATAGACGAAGAAATCGACGGCTTGCAAAAAG
AATACGCCGATTTGGACGAAATCTGGAAAGCCGAAAAAGCCGCGTCTTCCAGTACCGCCGACATCAAGAAACAGATGGAC
GACATCAAAGTCAAAATCGAGCAGGCCAAACGCCAAGGCGACTTCGCCCGCGCGTCCGAACTCGAATACGGCGAGTTGCC
GAAATTGGGCGCGCAGTTGCAGGCGGCGGAAAGCAACCCCGACGGCAAAAAACAAAACAAACTCTTCCGCACCGAAGTCG
GCGCGGACGAAGTGGCCGAAATCGTATCGCGCATGACCGGCATTCCTGTGTCCAAAATGATGGAAGGCGAACGCGACAAG
CTGCTGAAAATGGAAGAAGTATTGCACCGCCGAGTGGTCGGTCAAGACGAAGCCGTGCGTGCCGTGTCCGATGCCATCCG
CCGCAGCCGCTCCGGTCTTGCCGATCCGAACAAACCCTACGGCAGCTTCCTGTTCCTAGGCCCGACCGGCGTGGGTAAAA
CCGAGTTGTGCAAAGCCTTGGCAGGCTTCTTGTTTGACAGCGAAGACCACCTCATCCGCATCGACATGTCCGAATACATG
GAAAAACACGCCGTTGCCCGCTTAATCGGCGCGCCTCCGGGTTATGTCGGCTACGAAGAAGGCGGCTACCTGACCGAACA
AGTCCGCCGCAAACCGTACAGCGTGATTCTTTTGGATGAAGTGGAAAAAGCCCATCCCGACGTGTTCAACATCCTGCTGC
AAGTATTGGATGACGGTCGTTTGACCGACGGACAAGGCCGCACTGTGGACTTCAAAAACACTGTTATCGTCATGACTTCC
AACATCGGCAGCCAGCACATCCAACAAATGGGCACGCAGGATTACGAAGCCGTGAAAGAAGCGGTGATGGAAGAAGTGAA
AGCCTACTTCCGCCCCGAAATGATCAACCGTATCGACGAAGTGGTCGTGTTCCACGGACTGAATCAGGAGAATATCCGCA
ACATTGCGAAAATCCAGCTCAAAGGTTTGGAAAAACGTTTGGAAGCGCAGCACCTGCACCTGAAAGTGGACGATGCCGCC
TTGGATTTGATTGCCGAAGCCGGTTTCGACCCCGTGTACGGCGCCCGCCCGCTCAAACGCGCTATCCAGTCGGAAATCGA
AAACCCGCTGGCAAAAGCTCTGCTCGAAGGCAAATACGCGCCCGACAGTACGATTCATGTGAAAGAAGAGGGCGGCAAGC
TGGTGTTTGCCTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-761)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (767-847)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• AAA lid domain (AAA_lid_9) (342-442)

3D structure

• AlphaFold DB: D4DRB3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.444	100	0.445
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	38.87	100	0.401
clpC	Lactococcus lactis subsp. cremoris KW2	46.286	81.68	0.378