Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACJA3J_RS13870 Genome accession   NZ_CP174345
Coordinates   2710636..2712360 (-) Length   574 a.a.
NCBI ID   WP_089651777.1    Uniprot ID   -
Organism   Halobacillus sp. SY10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2705636..2717360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA3J_RS13850 (ACJA3J_13850) - 2706251..2707600 (-) 1350 WP_406944370.1 aspartate kinase -
  ACJA3J_RS13855 (ACJA3J_13855) - 2707808..2708083 (+) 276 WP_089651779.1 hypothetical protein -
  ACJA3J_RS13860 (ACJA3J_13860) spo0A 2708130..2708909 (-) 780 WP_089651778.1 sporulation transcription factor Spo0A -
  ACJA3J_RS13865 (ACJA3J_13865) spoIVB 2709150..2710400 (-) 1251 WP_089651886.1 SpoIVB peptidase -
  ACJA3J_RS13870 (ACJA3J_13870) recN 2710636..2712360 (-) 1725 WP_089651777.1 DNA repair protein RecN Machinery gene
  ACJA3J_RS13875 (ACJA3J_13875) ahrC 2712377..2712826 (-) 450 WP_089651776.1 transcriptional regulator AhrC/ArgR -
  ACJA3J_RS13880 (ACJA3J_13880) - 2712890..2713714 (-) 825 WP_089651775.1 TlyA family RNA methyltransferase -
  ACJA3J_RS13885 (ACJA3J_13885) dxs 2713719..2715611 (-) 1893 WP_406944371.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACJA3J_RS13890 (ACJA3J_13890) - 2715630..2716229 (-) 600 WP_089651773.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 65270.78 Da        Isoelectric Point: 4.7550

>NTDB_id=1076777 ACJA3J_RS13870 WP_089651777.1 2710636..2712360(-) (recN) [Halobacillus sp. SY10]
MLTELSIRDFAIIDRISITFKEGLTVLTGETGAGKSIIIDAIQLLSGGRGSVEFVRHGTKKAEIEGLFTVGNDHPIHKVG
KEFGVDIEEDGMVVLQRTITHQGKSICRVNGKLVTLGIMKEFGHSLIDIHSQHETQSLMDPDRHIELLDIFSDDDMKSSL
EEYHRVYDKYRVLKKRYKELSENEQEMAQRLDLLEFQLRELQEAEMQPLEDDELSEERKKLMNYEKIYQGIHDAYYSLYG
EQKGLDWLSHAMTSLESTADVDEELAKLSEEMSNSYYIIEELTFQLSNQMAALEFDPERLNQIESRLNELNRLKKKYGAT
VDDMLQYASRIEEEIDEIKNKDSHLNKMESEIHELGQDAVLEAKALHDIRTSSAATLSEYIHEELRDLYLEKASFAVDIN
LKEGRESDPELDGHPVQLLPNGIDIVKFLITTNPGEPLKELHKVASGGEMSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIAEKIYGISEGSQVLCISHLPQVAAMADTHVRIEKRVDNDRTHTAAKELTYDEKADEISRMITGAELTETTVEH
ARELLLMADKHKKR

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=1076777 ACJA3J_RS13870 WP_089651777.1 2710636..2712360(-) (recN) [Halobacillus sp. SY10]
ATGCTAACAGAATTGTCTATTCGTGATTTTGCAATCATTGATCGAATTTCAATTACGTTCAAAGAAGGTCTCACCGTACT
CACAGGAGAAACAGGTGCGGGTAAATCGATCATTATCGATGCCATTCAACTGCTATCTGGTGGACGAGGGTCTGTCGAGT
TCGTGCGCCATGGAACAAAAAAAGCCGAAATTGAAGGATTGTTCACCGTAGGAAACGATCATCCCATTCATAAAGTGGGA
AAAGAGTTTGGCGTCGATATTGAGGAAGATGGAATGGTGGTTCTCCAACGGACCATTACCCATCAAGGAAAGAGTATTTG
TCGAGTGAACGGGAAGTTGGTCACACTTGGAATTATGAAAGAATTCGGTCATTCCTTAATCGATATCCATAGTCAGCATG
AAACACAATCACTGATGGATCCAGACCGTCATATCGAACTCCTCGATATTTTTTCAGATGACGATATGAAATCTTCTTTG
GAAGAATACCATCGGGTATATGACAAATACCGTGTCTTGAAGAAACGCTACAAGGAACTGAGCGAAAATGAACAAGAAAT
GGCGCAGCGCTTGGATTTGCTTGAGTTTCAGCTGCGAGAACTCCAAGAAGCTGAAATGCAGCCACTAGAAGATGATGAAC
TCTCAGAAGAGCGTAAAAAGCTGATGAATTACGAAAAGATTTATCAAGGAATCCATGATGCTTATTATTCCTTATATGGC
GAACAAAAAGGCCTGGACTGGCTGAGTCATGCTATGACATCACTAGAGAGTACGGCAGACGTGGACGAGGAACTGGCCAA
ACTTTCAGAAGAAATGTCGAACTCTTACTATATCATCGAAGAGTTGACCTTCCAATTAAGCAATCAGATGGCAGCGCTTG
AGTTTGATCCTGAGCGTTTAAATCAAATTGAATCACGCTTAAACGAGTTGAATCGTTTGAAGAAGAAATATGGGGCAACG
GTCGATGATATGCTTCAATACGCCTCGAGGATTGAGGAAGAGATTGATGAGATTAAAAATAAGGATTCTCACTTGAATAA
GATGGAAAGTGAAATTCATGAGCTGGGTCAGGATGCTGTGCTGGAGGCGAAAGCCCTTCATGACATTAGGACGAGTTCAG
CAGCGACTTTATCAGAATACATCCATGAAGAATTAAGGGATTTGTATTTAGAAAAAGCATCTTTTGCTGTCGATATCAAC
TTGAAAGAAGGACGGGAATCCGATCCTGAGCTTGATGGGCATCCCGTACAATTGCTCCCAAATGGTATAGACATCGTTAA
ATTCCTAATTACCACAAATCCAGGAGAACCACTAAAAGAATTACATAAAGTTGCATCGGGAGGAGAAATGTCGCGGATTA
TGCTCGCTTTGAAGCGCATCTTTTCACGACACCAAGGCGTTACGAGTGTGATTTTCGACGAGGTAGATACGGGCGTCAGC
GGTCGAGTAGCTCAAGCGATTGCTGAAAAAATCTACGGGATATCGGAAGGGTCGCAAGTCTTGTGTATCTCACACCTCCC
ACAAGTAGCTGCTATGGCCGATACTCACGTGAGAATTGAAAAAAGAGTGGATAATGATCGAACTCATACAGCAGCAAAAG
AATTGACATATGATGAGAAAGCAGATGAAATATCCAGAATGATTACAGGCGCAGAACTGACAGAAACAACGGTTGAACAT
GCGCGTGAACTGCTTCTCATGGCTGATAAACATAAGAAACGTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.923

100

0.559

Multiple sequence alignment