Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACJA3J_RS06690 Genome accession   NZ_CP174345
Coordinates   1307231..1309039 (+) Length   602 a.a.
NCBI ID   WP_406945826.1    Uniprot ID   -
Organism   Halobacillus sp. SY10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302231..1314039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA3J_RS06665 (ACJA3J_06665) - 1302786..1303376 (+) 591 WP_089653941.1 N-acetyltransferase -
  ACJA3J_RS06670 (ACJA3J_06670) spxA 1303662..1304057 (+) 396 WP_008638741.1 transcriptional regulator SpxA -
  ACJA3J_RS06675 (ACJA3J_06675) - 1304141..1304806 (-) 666 WP_115824137.1 TerC family protein -
  ACJA3J_RS06680 (ACJA3J_06680) mecA 1305102..1305800 (+) 699 WP_089653943.1 adaptor protein MecA -
  ACJA3J_RS06685 (ACJA3J_06685) - 1306017..1307165 (+) 1149 WP_406945825.1 competence protein CoiA -
  ACJA3J_RS06690 (ACJA3J_06690) pepF 1307231..1309039 (+) 1809 WP_406945826.1 oligoendopeptidase F Regulator
  ACJA3J_RS06695 (ACJA3J_06695) - 1309349..1310236 (-) 888 WP_406945827.1 ClpXP adapter SpxH family protein -
  ACJA3J_RS06700 (ACJA3J_06700) - 1310233..1310631 (-) 399 WP_115824142.1 globin -
  ACJA3J_RS06705 (ACJA3J_06705) - 1310686..1311270 (-) 585 WP_115895138.1 CYTH domain-containing protein -
  ACJA3J_RS06710 (ACJA3J_06710) - 1311404..1312042 (+) 639 WP_089653949.1 GTP pyrophosphokinase family protein -
  ACJA3J_RS06715 (ACJA3J_06715) - 1312058..1312864 (+) 807 WP_089653950.1 NAD kinase -
  ACJA3J_RS06720 (ACJA3J_06720) - 1312884..1313735 (+) 852 WP_406945828.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69450.90 Da        Isoelectric Point: 4.6351

>NTDB_id=1076770 ACJA3J_RS06690 WP_406945826.1 1307231..1309039(+) (pepF) [Halobacillus sp. SY10]
MSSAKELPKREDIPVDKTWDLEAMFATDEEWYKELEEAKELLPELEKYQGKLGESAEQLYELLSFQDKISHKIGLLYTYA
HMRNDQDTTNAHYQEMNAKAENLYTKIASAMSFIVPEILALPEGKVKSFIESYEPLELYEHTLDEITRQRAHVLSEKEEK
LLAGFSEIGANPSQTFGALNNADLTFPTIKNEKGEEVDLTHGRYINFLKSDDREVRKSAFDAMYDTFGSFKNTFASTLGG
HVKKNNFNASVRKYDRARQAKLDSNNIPESVYDNLLEAVNERLPLLHRYAELRKEVLDLDEVHMYDLYTPLVKDAEMEVT
YEEAQDLVIKGLEPLGEEYVNIVKEGFENRWIDVEENKGKRSGAYSSGHYGTNPYILMNWQDNVNNLFTLAHELGHSLHS
YYTHQNQPYRYGNYSIFVAEVASTCNEALLNDYMIKKTNSEKEKLYLLNNFLEGFRGTVFRQTMFAEFEHEIHVQAQNGE
ALTAEKLTEIYYELNKKYFGENIVIDEKIGLEWARIPHFYMGYYVYQYSTGYAAAQALAGQILEEGEPAVERYKNFLKAG
SSDYPIEVLKQAGVDMTSKDPILSALDVFEEKLNEMEQLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1076770 ACJA3J_RS06690 WP_406945826.1 1307231..1309039(+) (pepF) [Halobacillus sp. SY10]
ATGTCGTCTGCGAAAGAACTACCAAAAAGAGAAGATATACCTGTTGATAAAACATGGGACCTTGAAGCCATGTTTGCCAC
AGATGAAGAATGGTATAAAGAATTAGAAGAAGCGAAGGAGCTGCTTCCTGAATTAGAAAAGTACCAGGGTAAACTGGGGG
AATCGGCGGAACAGCTATATGAGCTTCTTTCCTTTCAAGATAAAATTTCACATAAAATTGGCTTGTTGTACACTTATGCC
CATATGAGAAATGACCAGGATACAACGAATGCTCATTATCAGGAGATGAATGCAAAGGCTGAGAACTTATACACGAAGAT
CGCCTCGGCTATGAGTTTTATCGTTCCAGAGATTCTCGCTCTACCTGAAGGGAAAGTGAAAAGCTTTATTGAATCTTATG
AGCCCTTAGAGCTATATGAACATACACTCGATGAAATCACACGCCAACGAGCTCATGTATTGAGTGAGAAAGAGGAGAAA
TTGTTGGCTGGATTTTCTGAGATTGGTGCCAACCCTTCACAAACTTTCGGTGCCTTAAATAATGCGGATCTCACTTTTCC
AACTATAAAAAATGAAAAAGGAGAAGAGGTCGATCTAACTCACGGGCGCTATATCAATTTTCTGAAGTCAGATGATCGGG
AAGTGAGAAAATCTGCGTTTGATGCCATGTACGATACGTTTGGGTCGTTCAAGAACACATTTGCCTCCACACTCGGAGGA
CATGTGAAGAAGAACAATTTCAACGCGTCTGTAAGGAAATATGACCGGGCAAGACAAGCCAAACTGGATAGCAATAATAT
CCCCGAATCGGTTTATGATAACTTGCTCGAAGCAGTAAACGAAAGACTTCCTCTCTTGCATCGCTATGCAGAGCTTCGAA
AAGAAGTGCTGGACCTTGATGAAGTTCATATGTATGACTTGTACACTCCACTTGTGAAAGATGCAGAGATGGAAGTTACG
TACGAAGAAGCTCAGGACTTGGTCATCAAAGGCTTGGAGCCGTTGGGTGAAGAATACGTTAATATCGTTAAAGAGGGGTT
TGAAAATCGCTGGATTGACGTAGAGGAGAATAAAGGGAAGCGAAGCGGTGCTTATTCATCCGGCCATTATGGAACAAACC
CATATATTCTTATGAACTGGCAGGATAATGTAAATAATTTATTTACGTTAGCTCATGAACTCGGCCATTCTCTTCATAGC
TATTATACGCATCAAAACCAGCCATATCGCTACGGTAACTACTCCATTTTCGTGGCAGAGGTAGCTTCTACATGTAATGA
AGCCCTTCTCAATGACTATATGATTAAGAAGACAAATAGTGAAAAAGAGAAGCTTTATTTATTGAACAACTTTTTAGAAG
GCTTCCGTGGTACGGTTTTCCGCCAGACGATGTTTGCGGAATTCGAACACGAGATTCACGTTCAAGCCCAGAACGGCGAG
GCTTTGACAGCTGAAAAACTGACAGAAATTTATTATGAGCTAAATAAGAAATACTTTGGCGAGAATATCGTCATTGATGA
AAAAATTGGTCTTGAGTGGGCACGTATTCCGCATTTCTATATGGGATATTATGTGTACCAGTACTCTACTGGTTATGCAG
CCGCACAGGCATTAGCAGGACAAATCCTTGAAGAAGGAGAACCAGCGGTTGAACGCTATAAAAACTTCTTGAAGGCGGGC
AGCAGTGACTATCCGATTGAGGTCCTAAAGCAGGCTGGAGTCGATATGACATCGAAAGATCCCATATTATCAGCATTGGA
TGTTTTTGAAGAAAAATTAAATGAAATGGAACAACTTTTGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(208-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.402

97.176

0.48

Multiple sequence alignment