Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACI6TB_RS05185 Genome accession   NZ_CP174270
Coordinates   1134217..1136643 (-) Length   808 a.a.
NCBI ID   WP_406811976.1    Uniprot ID   -
Organism   Histophilus somni strain HSNMG-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1129217..1141643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6TB_RS05175 (ACI6TB_05175) rlmKL 1130214..1132370 (-) 2157 WP_406811975.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  ACI6TB_RS05180 (ACI6TB_05180) msbA 1132417..1134165 (-) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACI6TB_RS05185 (ACI6TB_05185) rec2 1134217..1136643 (-) 2427 WP_406811976.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI6TB_RS05190 (ACI6TB_05190) dksA 1136942..1137379 (+) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  ACI6TB_RS05195 (ACI6TB_05195) pcnB 1137681..1139054 (+) 1374 WP_406811977.1 polynucleotide adenylyltransferase PcnB -
  ACI6TB_RS05200 (ACI6TB_05200) folK 1139051..1139527 (+) 477 WP_406811978.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACI6TB_RS05205 (ACI6TB_05205) nagA 1139625..1140773 (-) 1149 WP_406811979.1 N-acetylglucosamine-6-phosphate deacetylase -
  ACI6TB_RS05210 (ACI6TB_05210) nagB 1140786..1141592 (-) 807 WP_406811980.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92416.90 Da        Isoelectric Point: 9.5955

>NTDB_id=1076663 ACI6TB_RS05185 WP_406811976.1 1134217..1136643(-) (rec2) [Histophilus somni strain HSNMG-1]
MKFNLDHYLFVILASAMTLLITPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGLGFFHYQALNLLEQS
EHIIRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSNLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLVFPTRYIEPYFPLILGIFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYNVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIADQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHITCQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKVLLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLIFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=1076663 ACI6TB_RS05185 WP_406811976.1 1134217..1136643(-) (rec2) [Histophilus somni strain HSNMG-1]
ATGAAATTCAACCTTGATCATTACCTGTTTGTTATTTTAGCGAGTGCAATGACATTGCTAATTACGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTTAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGTTGGGATTTTTTCATTATCAAGCATTAAACTTGCTGGAACAAAGT
GAGCATATTATCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCTGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAAGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCAATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGTTAGACAAGGAATTATGGCAACTCTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGGTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTAGTATTTCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGATTTTTTTAGCATTTTGTTATGCAGAATTAGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTATGTCGCATATGTCGAGTTTCCTATAATGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGCTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAC
GGTATCGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGCTGGAATATAGCTGATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATTTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCGAATGCTGAGTTTATCAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCTCATATTACTTGTCAAAAAGGAAAAATATGGCATTGGCAAGGGTTATATATTGA
AGCCTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAGTACTATTAACGGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCTTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGTCAAATTCGTTTAATATTCAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)

Domain of unknown function (DUF4131) (DUF4131)

(30-177)

Competence protein (Competence)

(210-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.114

100

0.511

Multiple sequence alignment