Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACI77R_RS00050 Genome accession   NZ_CP174268
Coordinates   8883..9512 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli isolate RiboJ-M2-day21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883..14512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI77R_RS00030 (ACI77R_00030) ycbZ 4284..6044 (-) 1761 WP_000156518.1 Lon protease family protein -
  ACI77R_RS00035 (ACI77R_00035) matP 6230..6682 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACI77R_RS00040 (ACI77R_00040) ompA 6758..7798 (-) 1041 WP_000750416.1 porin OmpA -
  ACI77R_RS00045 (ACI77R_00045) sulA 8155..8664 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACI77R_RS00050 (ACI77R_00050) sxy/tfoX 8883..9512 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACI77R_RS00055 (ACI77R_00055) yccS 9475..11637 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACI77R_RS00060 (ACI77R_00060) yccF 11647..12093 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACI77R_RS00065 (ACI77R_00065) helD 12216..14270 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1076629 ACI77R_RS00050 WP_000839153.1 8883..9512(+) (sxy/tfoX) [Escherichia coli isolate RiboJ-M2-day21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1076629 ACI77R_RS00050 WP_000839153.1 8883..9512(+) (sxy/tfoX) [Escherichia coli isolate RiboJ-M2-day21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment