Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACJEHT_RS04370 Genome accession   NZ_CP174243
Coordinates   983316..983864 (-) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF582     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978316..988864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHT_RS04350 (ACJEHT_04350) aroK 979049..979576 (-) 528 WP_010946667.1 shikimate kinase AroK -
  ACJEHT_RS04355 (ACJEHT_04355) pilQ 980022..982118 (-) 2097 WP_110539734.1 type IV pilus secretin PilQ Machinery gene
  ACJEHT_RS04360 (ACJEHT_04360) pilP 982122..982706 (-) 585 WP_027266404.1 pilus assembly protein PilP Machinery gene
  ACJEHT_RS04365 (ACJEHT_04365) pilO 982703..983302 (-) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJEHT_RS04370 (ACJEHT_04370) pilN 983316..983864 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  ACJEHT_RS04375 (ACJEHT_04375) pilM 983868..984932 (-) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  ACJEHT_RS04380 (ACJEHT_04380) ravI 985349..986356 (+) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=1076428 ACJEHT_RS04370 WP_010946663.1 983316..983864(-) (pilN) [Legionella pneumophila strain SPF582]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1076428 ACJEHT_RS04370 WP_010946663.1 983316..983864(-) (pilN) [Legionella pneumophila strain SPF582]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment