Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AABA48_RS16000 Genome accession   NZ_AP028967
Coordinates   3510942..3512294 (-) Length   450 a.a.
NCBI ID   WP_286351277.1    Uniprot ID   -
Organism   Geobacter sp. 60473     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3505942..3517294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA48_RS15980 (GEO60473_31500) - 3506505..3508364 (+) 1860 WP_286351274.1 cytochrome c3 family protein -
  AABA48_RS15990 (GEO60473_31510) - 3508662..3510461 (-) 1800 WP_324309372.1 ATP-binding protein -
  AABA48_RS15995 (GEO60473_31520) dksA 3510501..3510857 (-) 357 WP_286351276.1 RNA polymerase-binding protein DksA -
  AABA48_RS16000 (GEO60473_31530) radA 3510942..3512294 (-) 1353 WP_286351277.1 DNA repair protein RadA Machinery gene
  AABA48_RS16005 (GEO60473_31540) - 3512447..3514084 (+) 1638 WP_338270717.1 HEAT repeat domain-containing protein -
  AABA48_RS16010 (GEO60473_31550) - 3514077..3515438 (+) 1362 WP_286351279.1 HD domain-containing phosphohydrolase -
  AABA48_RS16015 (GEO60473_31560) - 3515448..3516029 (-) 582 WP_338270718.1 HEAT repeat domain-containing protein -
  AABA48_RS16020 (GEO60473_31570) - 3516137..3516469 (+) 333 WP_286351281.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47392.75 Da        Isoelectric Point: 7.1213

>NTDB_id=107634 AABA48_RS16000 WP_286351277.1 3510942..3512294(-) (radA) [Geobacter sp. 60473]
MKTVTRYACQKCGYQSAKWLGKCPDCAAWNSFVEEITGGGRKGGLPLPAATRPVPICDVAGEAETRLSCGNSEFDRVLGG
GLVSGSLVLIGGDPGIGKSTILLQVMDHLARTVGPVLYVSGEESARQTKMRGERLGIGARELLVLAETSLELILSQVTAL
APKALVIDSIQTVFSANLESAPGSVSQVRECAGRLMELAKRNGIPTLLVGHVTKDGSLAGPRVLEHMVDTVLYFEGDPGH
AFRILRAVKNRFGSTNEIGVFEMKEGGLSEVRNPSELFLAERPLGVSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRT
TLGVDHNRLALLVAVLDKKVGLHLSGQDIFLNAAGGARLSEPAIDLGMVAALASSHLDKIIDPHTVIVGEVGLAGEVRAI
TQAETRVREAAKLGFTRAIIPAGSVRQVGDVPGIRVTGVKSLDEALEQLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=107634 AABA48_RS16000 WP_286351277.1 3510942..3512294(-) (radA) [Geobacter sp. 60473]
GTGAAAACCGTAACCCGTTATGCCTGCCAGAAATGCGGCTACCAATCGGCCAAATGGCTCGGGAAATGCCCCGACTGCGC
CGCTTGGAACAGTTTTGTCGAGGAAATCACCGGCGGCGGACGGAAGGGTGGCCTCCCCCTGCCCGCAGCCACCCGCCCGG
TACCCATCTGTGATGTGGCCGGCGAGGCGGAAACACGCCTGTCGTGCGGCAACTCCGAGTTCGACCGGGTACTGGGCGGT
GGTCTTGTCTCCGGCTCTCTGGTGCTCATCGGCGGCGACCCCGGTATCGGCAAGTCCACCATTCTTTTGCAAGTCATGGA
CCACCTTGCGCGGACCGTAGGACCGGTTCTCTACGTGTCGGGAGAGGAATCGGCGCGACAGACAAAAATGCGCGGCGAAC
GCCTGGGCATCGGGGCACGTGAACTGCTCGTCCTCGCCGAGACCTCCCTCGAACTCATTCTGTCCCAAGTTACCGCTCTC
GCCCCCAAGGCCCTTGTGATCGACTCCATCCAGACCGTTTTCAGCGCGAACCTCGAATCGGCGCCCGGCAGCGTCAGCCA
GGTGCGTGAGTGCGCCGGCAGGCTCATGGAACTGGCCAAGCGCAACGGCATCCCCACTCTTCTTGTGGGACACGTGACAA
AGGACGGCTCCCTGGCGGGCCCACGGGTGCTGGAACACATGGTCGACACGGTGCTCTACTTCGAAGGGGACCCGGGACAT
GCCTTCAGAATTCTCAGGGCCGTCAAGAACCGCTTCGGCTCAACCAATGAAATCGGCGTATTCGAGATGAAAGAGGGCGG
GCTCAGCGAAGTGAGAAACCCGTCGGAACTCTTCCTGGCCGAACGGCCACTCGGCGTTTCGGGGTCCGCCGTCGTCACCA
CCATCGAGGGAAGCCGGCCGCTGCTGGTGGAACTGCAGGCGCTCGTCACCCCCTCATCCCTGGGCGTTCCACGCCGCACG
ACCCTCGGGGTCGACCACAACCGTCTCGCGCTCCTGGTGGCCGTGCTCGACAAAAAAGTCGGCCTCCACCTGTCGGGGCA
GGACATCTTCCTAAACGCCGCGGGCGGCGCACGGCTCAGCGAGCCGGCCATCGATCTGGGCATGGTGGCGGCCCTCGCAT
CGAGCCACTTGGACAAGATCATCGATCCCCACACGGTCATTGTCGGCGAAGTGGGCCTTGCGGGTGAAGTCCGCGCCATT
ACCCAGGCGGAAACACGAGTGCGCGAGGCCGCAAAACTGGGCTTCACGAGGGCGATTATCCCCGCCGGCAGCGTCCGACA
GGTCGGCGATGTGCCCGGAATTAGAGTCACGGGGGTGAAATCCCTGGACGAAGCGCTGGAACAGCTCTTCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-444)

AAA domain (AAA_25)

(77-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.222

100

0.562
  radA Streptococcus mitis NCTC 12261

54.036

99.111

0.536
  radA Streptococcus pneumoniae Rx1

54.036

99.111

0.536
  radA Streptococcus pneumoniae D39

54.036

99.111

0.536
  radA Streptococcus pneumoniae R6

54.036

99.111

0.536
  radA Streptococcus pneumoniae TIGR4

54.036

99.111

0.536
  radA Streptococcus mitis SK321

54.036

99.111

0.536

Multiple sequence alignment