Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AABA48_RS08975 Genome accession   NZ_AP028967
Coordinates   1992215..1993267 (-) Length   350 a.a.
NCBI ID   WP_286350165.1    Uniprot ID   -
Organism   Geobacter sp. 60473     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1987215..1998267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA48_RS08950 (GEO60473_17520) - 1988376..1989164 (-) 789 WP_286350160.1 TIGR00282 family metallophosphoesterase -
  AABA48_RS08955 (GEO60473_17530) rny 1989154..1990716 (-) 1563 WP_286350161.1 ribonuclease Y -
  AABA48_RS08960 (GEO60473_17540) - 1990744..1991307 (-) 564 WP_286350162.1 5-formyltetrahydrofolate cyclo-ligase -
  AABA48_RS08965 (GEO60473_17550) - 1991690..1991977 (-) 288 WP_286350163.1 cell division protein ZapA -
  AABA48_RS08970 (GEO60473_17560) zapB 1991977..1992153 (-) 177 WP_286350164.1 cell division protein ZapB -
  AABA48_RS08975 (GEO60473_17570) pilA 1992215..1993267 (-) 1053 WP_286350165.1 signal recognition particle-docking protein FtsY Machinery gene
  AABA48_RS08980 (GEO60473_17580) - 1993269..1993628 (-) 360 WP_286350166.1 roadblock/LC7 domain-containing protein -
  AABA48_RS08985 (GEO60473_17590) smc 1993648..1997175 (-) 3528 WP_338269990.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37998.33 Da        Isoelectric Point: 5.2260

>NTDB_id=107627 AABA48_RS08975 WP_286350165.1 1992215..1993267(-) (pilA) [Geobacter sp. 60473]
MTEERKGFFKGLWGKVTGGDRDQEEAVDETTSAVADVAAPPEQEDRRPGFFERLKQGLSKTRDSLVGRIDRLVLGKKEID
ADTLEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALREALKEDIHGRLARDAHQLDVTGASPFVIMVIGVNGV
GKTTTIGKLAARFTAQGKRVILAAGDTFRAAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTA
GRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTAKGGIVVAICNEF
RIPVRYIGVGEGVDDLRDFDPSQFVDALFQ

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=107627 AABA48_RS08975 WP_286350165.1 1992215..1993267(-) (pilA) [Geobacter sp. 60473]
ATGACGGAAGAACGGAAGGGCTTTTTCAAGGGACTTTGGGGTAAGGTTACCGGCGGCGATCGTGATCAGGAAGAGGCAGT
CGATGAAACGACGTCCGCCGTTGCGGATGTCGCTGCACCGCCGGAGCAGGAAGACCGGCGCCCCGGATTTTTCGAGCGGC
TCAAGCAGGGGCTGAGCAAGACCCGCGATAGCCTGGTGGGGCGCATCGATCGTCTCGTGCTCGGCAAGAAGGAGATTGAC
GCCGACACCCTTGAGGAGCTGGAAGAGATACTCATCACCGCCGATCTGGGCGTCCAGACCACCGTGGAGTTGATCAGGGG
ATTGGAGCAGCGCCTCTCCCGCAACGAGCTCAAGGACGGCGAGGCCCTCAGGGAGGCGCTCAAGGAGGATATCCACGGTC
GCCTTGCCCGTGACGCCCATCAGCTGGACGTAACAGGGGCCTCTCCCTTCGTCATCATGGTCATCGGCGTCAACGGCGTC
GGCAAGACCACTACCATTGGCAAGCTCGCGGCCCGGTTTACCGCCCAGGGGAAAAGAGTGATTCTGGCCGCCGGCGACAC
CTTCCGCGCTGCTGCCGCCGAGCAGCTCCAGATATGGGGCGAGCGCACCGGCGTCGACGTGATCCGCCACAAGGAAGGAG
CGGATCCGTCTGCCGTTGTGTTCGACAGCATCAAGGCGGCCGTGGCCCGTGGCGCGGACATCCTCATCGTCGACACCGCC
GGACGTCTCCATACCAAGGTAAATCTCATGGAGGAACTCAAAAAGGTCCGCCGCATCATGTCGCGGGAGATCCCCGGGGC
TCCCCATGAGACGTTGCTGGTTCTTGACGCGGCAACGGGACAGAATGCCCTCTCGCAGGCGAAACTCTTCAAGGAGGCAG
CCCAGGTTACCGGCATCGCCCTGACAAAGCTCGACGGTACGGCAAAGGGAGGAATCGTGGTTGCAATCTGCAATGAGTTC
AGGATTCCCGTCCGTTACATCGGCGTCGGCGAGGGGGTCGACGACCTGCGGGATTTCGATCCCTCCCAATTCGTGGACGC
CCTCTTTCAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(149-349)

SRP54-type protein, helical bundle domain (SRP54_N)

(66-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.454

93.143

0.489

Multiple sequence alignment