Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AABJ90_RS18760 Genome accession   NZ_AP028964
Coordinates   3674415..3674864 (+) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3669415..3679864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS18740 (BsubNA05_36200) hxlR 3670626..3670988 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  AABJ90_RS18745 (BsubNA05_36210) hxlA 3671220..3671852 (+) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  AABJ90_RS18750 (BsubNA05_36220) hxlB 3671858..3672415 (+) 558 WP_069322365.1 6-phospho-3-hexuloisomerase -
  AABJ90_RS18755 (BsubNA05_36230) tlpC 3672526..3674247 (+) 1722 WP_061891260.1 methyl-accepting chemotaxis protein TlpC -
  AABJ90_RS18760 (BsubNA05_36240) nucA/comI 3674415..3674864 (+) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  AABJ90_RS18765 (BsubNA05_36250) nin/comJ 3674891..3675289 (+) 399 WP_338382232.1 DNA-entry nuclease inhibitor Regulator
  AABJ90_RS18770 (BsubNA05_36260) bglC 3675326..3676759 (-) 1434 WP_097080589.1 6-phospho-beta-glucosidase -
  AABJ90_RS18775 (BsubNA05_36270) - 3676832..3677560 (-) 729 WP_174223466.1 AAA family ATPase -
  AABJ90_RS18780 (BsubNA05_36280) - 3677579..3677920 (-) 342 WP_032724911.1 DUF3147 family protein -
  AABJ90_RS18785 (BsubNA05_36290) - 3677908..3678330 (-) 423 WP_174616579.1 MarR family transcriptional regulator -
  AABJ90_RS18790 (BsubNA05_36300) yckD 3678458..3678790 (-) 333 WP_134991924.1 YckD family protein -
  AABJ90_RS18795 (BsubNA05_36310) - 3678872..3679186 (-) 315 Protein_3686 RDD family protein -
  AABJ90_RS18800 - 3679226..3679422 (-) 197 Protein_3687 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=107621 AABJ90_RS18760 WP_003234608.1 3674415..3674864(+) (nucA/comI) [Bacillus subtilis strain NA05 = NBRC 116153]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=107621 AABJ90_RS18760 WP_003234608.1 3674415..3674864(+) (nucA/comI) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment