Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   AABJ90_RS18725 Genome accession   NZ_AP028964
Coordinates   3656002..3656142 (-) Length   46 a.a.
NCBI ID   WP_010886404.1    Uniprot ID   A0AAX3RTW8
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 3651002..3661142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS18720 - 3654884..3656056 (-) 1173 Protein_3671 condensation domain-containing protein -
  AABJ90_RS18725 comS 3656002..3656142 (-) 141 WP_010886404.1 competence protein ComS Regulator
  AABJ90_RS18730 srfAB 3656186..3659275 (-) 3090 Protein_3673 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5244.05 Da        Isoelectric Point: 9.2422

>NTDB_id=107620 AABJ90_RS18725 WP_010886404.1 3656002..3656142(-) (comS) [Bacillus subtilis strain NA05 = NBRC 116153]
MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWREK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=107620 AABJ90_RS18725 WP_010886404.1 3656002..3656142(-) (comS) [Bacillus subtilis strain NA05 = NBRC 116153]
TTGAACCGATCAGGCAAGCATCTTATCAGCAGCATTATCCTGTATCCCCGGCCCAGCGGAGAATGTATATCCTCAATCAG
CTTGGACAAGCAAACACAAGCTACAACGTCCCCGCTGTACTTCTGCTGGAGGGAGAAGTAG

Domains


Predicted by InterproScan.

(1-44)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment