Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AABJ90_RS15155 Genome accession   NZ_AP028964
Coordinates   2969802..2970380 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2964802..2975380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS15120 (BsubNA05_29420) lepB 2964807..2965313 (-) 507 WP_003233128.1 signal peptidase I -
  AABJ90_RS15125 (BsubNA05_29430) yhjE 2965315..2965938 (-) 624 WP_010886465.1 VTT domain-containing protein -
  AABJ90_RS15130 (BsubNA05_29440) - 2966090..2966461 (+) 372 WP_014476361.1 hypothetical protein -
  AABJ90_RS15135 (BsubNA05_29450) yhjC 2966660..2966860 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  AABJ90_RS15140 (BsubNA05_29460) yhjB 2966857..2968326 (+) 1470 WP_003233134.1 sodium:solute symporter -
  AABJ90_RS15145 (BsubNA05_29470) yhjA 2968370..2968639 (-) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  AABJ90_RS15150 (BsubNA05_29480) yhxD 2968856..2969755 (+) 900 WP_076457899.1 SDR family oxidoreductase -
  AABJ90_RS15155 (BsubNA05_29490) comK 2969802..2970380 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  AABJ90_RS15160 (BsubNA05_29500) yhzC 2970673..2970906 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  AABJ90_RS15165 (BsubNA05_29510) yhxC 2970934..2971791 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  AABJ90_RS15170 (BsubNA05_29520) yhfW 2971903..2973432 (+) 1530 WP_032730444.1 FAD-dependent oxidoreductase -
  AABJ90_RS15175 (BsubNA05_29530) hemAT 2973571..2974869 (+) 1299 WP_106073784.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=107610 AABJ90_RS15155 WP_003245329.1 2969802..2970380(-) (comK) [Bacillus subtilis strain NA05 = NBRC 116153]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=107610 AABJ90_RS15155 WP_003245329.1 2969802..2970380(-) (comK) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment