Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AABJ90_RS13145 Genome accession   NZ_AP028964
Coordinates   2579986..2580450 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2574986..2585450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS13125 (BsubNA05_25460) fadH 2576174..2576938 (-) 765 WP_338382018.1 2,4-dienoyl-CoA reductase -
  AABJ90_RS13130 (BsubNA05_25470) ppeE 2577081..2577941 (+) 861 WP_003232400.1 metallophosphoesterase -
  AABJ90_RS13135 (BsubNA05_25480) ltdD 2577998..2578492 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  AABJ90_RS13140 (BsubNA05_25490) ykuC 2578568..2579860 (+) 1293 WP_015252195.1 MFS transporter -
  AABJ90_RS13145 (BsubNA05_25500) kre 2579986..2580450 (+) 465 WP_003232406.1 YkyB family protein Regulator
  AABJ90_RS13150 (BsubNA05_25510) cheV 2580494..2581405 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  AABJ90_RS13155 (BsubNA05_25520) - 2581609..2581770 (+) 162 WP_003245246.1 hypothetical protein -
  AABJ90_RS13160 (BsubNA05_25530) dapX 2581972..2583153 (+) 1182 WP_014479654.1 aminotransferase A -
  AABJ90_RS13165 (BsubNA05_25540) kinA 2583164..2584984 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=107598 AABJ90_RS13145 WP_003232406.1 2579986..2580450(+) (kre) [Bacillus subtilis strain NA05 = NBRC 116153]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=107598 AABJ90_RS13145 WP_003232406.1 2579986..2580450(+) (kre) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGAGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment