Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AABJ90_RS13045 Genome accession   NZ_AP028964
Coordinates   2563997..2564572 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2558997..2569572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS13020 (BsubNA05_25250) mobB 2559393..2559914 (-) 522 WP_029725925.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AABJ90_RS13025 (BsubNA05_25260) glp 2559875..2561167 (-) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  AABJ90_RS13030 (BsubNA05_25270) moeB 2561185..2562204 (-) 1020 WP_173614061.1 molybdopterin-synthase adenylyltransferase MoeB -
  AABJ90_RS13035 (BsubNA05_25280) mobA 2562255..2562854 (-) 600 WP_041335768.1 molybdenum cofactor guanylyltransferase -
  AABJ90_RS13040 (BsubNA05_25290) cse15 2562991..2563956 (+) 966 WP_041335771.1 spore protein Cse15 -
  AABJ90_RS13045 (BsubNA05_25300) rok 2563997..2564572 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  AABJ90_RS13050 (BsubNA05_25310) ykuV 2565038..2565484 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  AABJ90_RS13055 (BsubNA05_25320) ahpA 2565556..2566098 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  AABJ90_RS13060 (BsubNA05_25330) mscT 2566335..2567138 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  AABJ90_RS13065 (BsubNA05_25340) ykuS 2567175..2567420 (-) 246 WP_003232382.1 YkuS family protein -
  AABJ90_RS13070 (BsubNA05_25350) dapI 2567482..2568606 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  AABJ90_RS13075 (BsubNA05_25360) dapD 2568676..2569386 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=107597 AABJ90_RS13045 WP_003232378.1 2563997..2564572(-) (rok) [Bacillus subtilis strain NA05 = NBRC 116153]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=107597 AABJ90_RS13045 WP_003232378.1 2563997..2564572(-) (rok) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment