Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AABJ90_RS12095 Genome accession   NZ_AP028964
Coordinates   2374889..2375782 (-) Length   297 a.a.
NCBI ID   WP_086343834.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2369889..2380782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS12080 (BsubNA05_23380) xerC 2370260..2371174 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  AABJ90_RS12085 (BsubNA05_23390) trmFO 2371242..2372549 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AABJ90_RS12090 (BsubNA05_23400) topA 2372625..2374700 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  AABJ90_RS12095 (BsubNA05_23410) dprA 2374889..2375782 (-) 894 WP_086343834.1 DNA-processing protein DprA Machinery gene
  AABJ90_RS12100 (BsubNA05_23420) sucD 2375843..2376745 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AABJ90_RS12105 (BsubNA05_23430) sucC 2376774..2377931 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  AABJ90_RS12110 (BsubNA05_23440) ylqH 2378104..2378385 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  AABJ90_RS12115 (BsubNA05_23450) - 2378382..2380112 (-) 1731 WP_338381991.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32874.22 Da        Isoelectric Point: 10.0054

>NTDB_id=107595 AABJ90_RS12095 WP_086343834.1 2374889..2375782(-) (dprA) [Bacillus subtilis strain NA05 = NBRC 116153]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKVICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=107595 AABJ90_RS12095 WP_086343834.1 2374889..2375782(-) (dprA) [Bacillus subtilis strain NA05 = NBRC 116153]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGTGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

41.418

90.236

0.374

Multiple sequence alignment