Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   ACJEHG_RS04875 Genome accession   NZ_CP174228
Coordinates   1109555..1110142 (-) Length   195 a.a.
NCBI ID   WP_010946665.1    Uniprot ID   Q5ZX03
Organism   Legionella pneumophila strain SPF638     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1104555..1115142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHG_RS04860 (ACJEHG_04860) aroB 1105386..1106495 (-) 1110 WP_010946668.1 3-dehydroquinate synthase -
  ACJEHG_RS04865 (ACJEHG_04865) aroK 1106482..1107009 (-) 528 WP_010946667.1 shikimate kinase AroK -
  ACJEHG_RS04870 (ACJEHG_04870) pilQ 1107455..1109551 (-) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  ACJEHG_RS04875 (ACJEHG_04875) pilP 1109555..1110142 (-) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  ACJEHG_RS04880 (ACJEHG_04880) pilO 1110139..1110738 (-) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJEHG_RS04885 (ACJEHG_04885) pilN 1110752..1111300 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  ACJEHG_RS04890 (ACJEHG_04890) pilM 1111304..1112368 (-) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  ACJEHG_RS04895 (ACJEHG_04895) ravI 1112785..1113795 (+) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -

Sequence


Protein


Download         Length: 195 a.a.        Molecular weight: 22343.91 Da        Isoelectric Point: 10.3617

>NTDB_id=1075796 ACJEHG_RS04875 WP_010946665.1 1109555..1110142(-) (pilP) [Legionella pneumophila strain SPF638]
MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRF
PENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1075796 ACJEHG_RS04875 WP_010946665.1 1109555..1110142(-) (pilP) [Legionella pneumophila strain SPF638]
ATGATAATTAAAAATAACCAGACTCTTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGCACTTTACTCACCTCAGAGAA
TTTCCGAAAAAGCCTATTCACAGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGT
ACATCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTT
CCAGAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAA
AAGGCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCT
GGGCTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATT
ATTTTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAAT
TAATTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(50-189)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZX03

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

96.923

100

0.969


Multiple sequence alignment