Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABJ90_RS08150 Genome accession   NZ_AP028964
Coordinates   1577110..1577877 (+) Length   255 a.a.
NCBI ID   WP_338382604.1    Uniprot ID   -
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1572110..1582877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS08120 (BsubNA05_15610) pgpH 1572406..1574541 (+) 2136 WP_338382603.1 cyclic-di-AMP phosphodiesterase PgpH -
  AABJ90_RS08125 (BsubNA05_15620) ybeY 1574542..1575015 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  AABJ90_RS08130 (BsubNA05_15630) unpK 1574996..1575367 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  AABJ90_RS08135 (BsubNA05_15640) cdd 1575486..1575896 (+) 411 WP_003230049.1 cytidine deaminase -
  AABJ90_RS08140 (BsubNA05_15650) era 1575877..1576782 (+) 906 WP_003230051.1 GTPase Era -
  AABJ90_RS08145 (BsubNA05_15660) yqzL 1576930..1577073 (+) 144 WP_003230053.1 YqzL family protein -
  AABJ90_RS08150 (BsubNA05_15670) recO 1577110..1577877 (+) 768 WP_338382604.1 DNA repair protein RecO Machinery gene
  AABJ90_RS08155 (BsubNA05_15680) glyQ 1578174..1579061 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  AABJ90_RS08160 (BsubNA05_15690) glyS 1579054..1581093 (+) 2040 WP_338382605.1 glycine--tRNA ligase subunit beta -
  AABJ90_RS08165 (BsubNA05_15700) ccpN 1581226..1581864 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  AABJ90_RS08170 (BsubNA05_15710) ppsR 1581890..1582702 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.97 Da        Isoelectric Point: 8.3122

>NTDB_id=107578 AABJ90_RS08150 WP_338382604.1 1577110..1577877(+) (recO) [Bacillus subtilis strain NA05 = NBRC 116153]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTANAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=107578 AABJ90_RS08150 WP_338382604.1 1577110..1577877(+) (recO) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCAAATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment