Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AABJ90_RS07900 Genome accession   NZ_AP028964
Coordinates   1534026..1534436 (+) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   A0A6I4D881
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1529026..1539436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS07865 (BsubNA05_15130) yrkP 1529726..1530421 (+) 696 WP_338382600.1 two-component response regulator YrkP -
  AABJ90_RS07870 (BsubNA05_15140) yrkQ 1530408..1531706 (+) 1299 WP_019712554.1 two-component system sensor histidine kinase YrkQ -
  AABJ90_RS07875 (BsubNA05_15150) psiE 1531752..1532168 (+) 417 WP_338382674.1 phosphate-starvation-inducible protein PsiE -
  AABJ90_RS07880 - 1532713..1532877 (+) 165 WP_010886576.1 hypothetical protein -
  AABJ90_RS07885 - 1532820..1533020 (+) 201 Protein_1543 recombinase family protein -
  AABJ90_RS07890 - 1532986..1533102 (-) 117 WP_003229898.1 hypothetical protein -
  AABJ90_RS07895 (BsubNA05_15160) sigK 1533102..1533830 (-) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  AABJ90_RS07900 (BsubNA05_15170) nucA/comI 1534026..1534436 (+) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  AABJ90_RS07905 (BsubNA05_15180) yqeB 1534469..1535191 (-) 723 WP_219144591.1 DUF308 domain-containing protein -
  AABJ90_RS07910 (BsubNA05_15190) gnd 1535444..1536337 (+) 894 WP_163138265.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  AABJ90_RS07915 (BsubNA05_15200) yqeD 1536356..1536982 (-) 627 WP_038429330.1 TVP38/TMEM64 family protein -
  AABJ90_RS07920 (BsubNA05_15210) cwlH 1537169..1537921 (+) 753 WP_163138266.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  AABJ90_RS07925 (BsubNA05_15220) yqeF 1538173..1538904 (+) 732 WP_029317882.1 SGNH/GDSL hydrolase family protein -
  AABJ90_RS07930 - 1539210..1539350 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=107574 AABJ90_RS07900 WP_009967785.1 1534026..1534436(+) (nucA/comI) [Bacillus subtilis strain NA05 = NBRC 116153]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=107574 AABJ90_RS07900 WP_009967785.1 1534026..1534436(+) (nucA/comI) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCAGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTACCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4D881

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529

Multiple sequence alignment