Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AABJ90_RS02990 Genome accession   NZ_AP028964
Coordinates   586831..587520 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 581831..592520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS02970 (BsubNA05_05780) tagO 582406..583482 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  AABJ90_RS02975 (BsubNA05_05790) tagV 583555..584721 (-) 1167 WP_173614336.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AABJ90_RS02980 (BsubNA05_05800) yvyE 584721..585374 (-) 654 WP_003227979.1 YigZ family protein -
  AABJ90_RS02985 (BsubNA05_05810) degS 585591..586748 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AABJ90_RS02990 (BsubNA05_05820) degU 586831..587520 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AABJ90_RS02995 (BsubNA05_05830) fakBA 587618..588463 (+) 846 WP_003244125.1 DegV family protein -
  AABJ90_RS03000 (BsubNA05_05840) comFA 588569..589960 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  AABJ90_RS03005 (BsubNA05_05850) comFB 590020..590316 (+) 297 WP_003227989.1 late competence protein ComFB -
  AABJ90_RS03010 (BsubNA05_05860) comFC 590280..591002 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  AABJ90_RS03015 (BsubNA05_05870) yvyF 591076..591495 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AABJ90_RS03020 (BsubNA05_05880) flgM 591576..591842 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  AABJ90_RS03025 (BsubNA05_05890) flgN 591858..592340 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=107558 AABJ90_RS02990 WP_003219701.1 586831..587520(+) (degU) [Bacillus subtilis strain NA05 = NBRC 116153]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=107558 AABJ90_RS02990 WP_003219701.1 586831..587520(+) (degU) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment