Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   AABJ90_RS01895 Genome accession   NZ_AP028964
Coordinates   375293..376438 (-) Length   381 a.a.
NCBI ID   WP_017696253.1    Uniprot ID   A0A0C3JF17
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 370293..381438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS01870 (BsubNA05_03650) pbpG 370556..372631 (-) 2076 WP_015384942.1 transglycosylase domain-containing protein -
  AABJ90_RS01875 (BsubNA05_03660) speE 372833..373663 (+) 831 WP_003227543.1 spermidine synthase -
  AABJ90_RS01880 (BsubNA05_03670) speB 373724..374596 (+) 873 WP_185184053.1 agmatinase -
  AABJ90_RS01885 (BsubNA05_03680) ywhH 374628..375090 (-) 463 Protein_372 YbaK/EbsC family protein -
  AABJ90_RS01890 (BsubNA05_03690) - 375190..375309 (-) 120 WP_014665774.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  AABJ90_RS01895 (BsubNA05_03700) rapF 375293..376438 (-) 1146 WP_017696253.1 tetratricopeptide repeat protein Regulator
  AABJ90_RS01900 - 376441..376671 (+) 231 WP_041334639.1 hypothetical protein -
  AABJ90_RS01905 (BsubNA05_03710) ywhK 376668..378023 (+) 1356 WP_338382428.1 YncE family protein -
  AABJ90_RS01910 (BsubNA05_03720) ywhL 378063..379439 (+) 1377 WP_338382429.1 YncE family protein -
  AABJ90_RS01915 (BsubNA05_03730) albG 379445..380146 (-) 702 WP_029726080.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  AABJ90_RS01920 (BsubNA05_03740) albF 380143..381423 (-) 1281 WP_128480842.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45593.24 Da        Isoelectric Point: 5.0684

>NTDB_id=107553 AABJ90_RS01895 WP_017696253.1 375293..376438(-) (rapF) [Bacillus subtilis strain NA05 = NBRC 116153]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=107553 AABJ90_RS01895 WP_017696253.1 375293..376438(-) (rapF) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTACCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_8)

(263-290)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3JF17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

80.052

100

0.801
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57

Multiple sequence alignment