Detailed information NTG0107513

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: EX97_RS04055
• Genome accession: NZ_CP007690
• Coordinates: 828448..829530 (+)
• Length: 360 a.a.
• NCBI ID: WP_001548033.1
• Uniprot ID: A0A0H2XJ41
• Organism: Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 823448..834530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EX97_RS04035 (EX97_03860)	gdpS	823820..824890 (-)	1071	WP_000460983.1	GGDEF domain-containing protein GdpS	-
EX97_RS04040 (EX97_03865)	-	825208..826263 (+)	1056	WP_000258151.1	glycosyltransferase family 4 protein	-
EX97_RS04045 (EX97_03870)	-	826433..827074 (-)	642	WP_000192947.1	YigZ family protein	-
EX97_RS04050 (EX97_03875)	fakB1	827218..828084 (+)	867	WP_000686342.1	fatty acid kinase binding subunit FakB1	-
EX97_RS04055 (EX97_03880)	comFA	828448..829530 (+)	1083	WP_001548033.1	DEAD/DEAH box helicase	Machinery gene
EX97_RS04060 (EX97_03885)	-	829523..830197 (+)	675	WP_001057965.1	ComF family protein	-
EX97_RS04065 (EX97_03890)	hpf	830258..830830 (+)	573	WP_000617735.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
EX97_RS04070 (EX97_03895)	secA	831244..833775 (+)	2532	WP_000506531.1	preprotein translocase subunit SecA	-
EX97_RS04075	-	833817..833921 (+)	105	WP_001790092.1	hypothetical protein	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 42111.65 Da
• Isoelectric Point: 9.8307

>NTDB_id=107513 EX97_RS04055 WP_001548033.1 828448..829530(+) (comFA) [Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide

• Length: 1083 bp

>NTDB_id=107513 EX97_RS04055 WP_001548033.1 828448..829530(+) (comFA) [Staphylococcus aureus strain UA-S391_USA300 isolate abscess/wound isolate]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGGGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (215-318)

• Type III restriction enzyme, res subunit (ResIII) (25-173)

3D structure

• AlphaFold DB: A0A0H2XJ41

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	38.938	94.167	0.367