Detailed information NTG1074950

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACJA24_RS17625
• Genome accession: NZ_CP174198
• Coordinates: 3556817..3557962 (+)
• Length: 381 a.a.
• NCBI ID: WP_014306020.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LQ-03
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3551817..3562962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJA24_RS17605	-	3552291..3553007 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
ACJA24_RS17610	narK	3553105..3554295 (-)	1191	WP_014306018.1	nitrate transporter NarK	-
ACJA24_RS17615	argS	3554430..3556100 (-)	1671	WP_014306019.1	arginine--tRNA ligase	-
ACJA24_RS17620	-	3556097..3556525 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
ACJA24_RS17625	rapF	3556817..3557962 (+)	1146	WP_014306020.1	tetratricopeptide repeat protein	Regulator
ACJA24_RS17630	-	3557946..3558065 (+)	120	WP_015387559.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACJA24_RS17635	-	3558264..3558467 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
ACJA24_RS17640	-	3558481..3558684 (+)	204	WP_003151062.1	hypothetical protein	-
ACJA24_RS17645	-	3559092..3559373 (+)	282	WP_014306021.1	hypothetical protein	-
ACJA24_RS17650	-	3559417..3559929 (+)	513	WP_003151059.1	stage II sporulation protein M	-
ACJA24_RS17655	-	3560520..3560738 (-)	219	WP_003151056.1	LuxR C-terminal-related transcriptional regulator	-
ACJA24_RS17660	speB	3560908..3561780 (-)	873	WP_003151054.1	agmatinase	-
ACJA24_RS17665	speE	3561840..3562670 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45617.80 Da
• Isoelectric Point: 4.6084

>NTDB_id=1074950 ACJA24_RS17625 WP_014306020.1 3556817..3557962(+) (rapF) [Bacillus velezensis strain LQ-03]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLEYLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1074950 ACJA24_RS17625 WP_014306020.1 3556817..3557962(+) (rapF) [Bacillus velezensis strain LQ-03]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCTTT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATATTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (189-253)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.478	100	0.785
rapC	Bacillus subtilis subsp. subtilis str. 168	56.842	99.738	0.567