Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACJA24_RS12055 Genome accession   NZ_CP174198
Coordinates   2486599..2487366 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain LQ-03     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2481599..2492366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA24_RS12035 - 2481801..2482613 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  ACJA24_RS12040 ccpN 2482639..2483277 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACJA24_RS12045 glyS 2483378..2485417 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  ACJA24_RS12050 glyQ 2485410..2486297 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACJA24_RS12055 recO 2486599..2487366 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  ACJA24_RS12060 - 2487403..2487546 (-) 144 WP_007408286.1 YqzL family protein -
  ACJA24_RS12065 era 2487702..2488607 (-) 906 WP_003152978.1 GTPase Era -
  ACJA24_RS12070 - 2488588..2488998 (-) 411 WP_003152976.1 cytidine deaminase -
  ACJA24_RS12075 - 2489122..2489496 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ACJA24_RS12080 ybeY 2489477..2489950 (-) 474 WP_014305439.1 rRNA maturation RNase YbeY -
  ACJA24_RS12085 - 2489951..2492083 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=1074925 ACJA24_RS12055 WP_003152982.1 2486599..2487366(-) (recO) [Bacillus velezensis strain LQ-03]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1074925 ACJA24_RS12055 WP_003152982.1 2486599..2487366(-) (recO) [Bacillus velezensis strain LQ-03]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment