Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ACJA24_RS07120 Genome accession   NZ_CP174198
Coordinates   1359457..1359921 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain LQ-03     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354457..1364921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA24_RS07100 - 1354937..1356757 (+) 1821 WP_406795388.1 PAS domain-containing protein -
  ACJA24_RS07105 - 1356733..1357952 (-) 1220 Protein_1340 aminotransferase A -
  ACJA24_RS07110 - 1358153..1358314 (-) 162 WP_007409608.1 hypothetical protein -
  ACJA24_RS07115 cheV 1358503..1359414 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  ACJA24_RS07120 kre 1359457..1359921 (-) 465 WP_003154622.1 YkyB family protein Regulator
  ACJA24_RS07125 - 1360044..1361336 (-) 1293 WP_014304918.1 MFS transporter -
  ACJA24_RS07130 - 1361412..1361906 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  ACJA24_RS07135 - 1361981..1362844 (-) 864 WP_014304919.1 metallophosphoesterase -
  ACJA24_RS07140 fadH 1362988..1363752 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  ACJA24_RS07145 - 1363863..1364411 (+) 549 Protein_1348 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1074906 ACJA24_RS07120 WP_003154622.1 1359457..1359921(-) (kre) [Bacillus velezensis strain LQ-03]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1074906 ACJA24_RS07120 WP_003154622.1 1359457..1359921(-) (kre) [Bacillus velezensis strain LQ-03]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment