Detailed information NTG1074790

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACCO34_RS18905
• Genome accession: NZ_CP174160
• Coordinates: 3724952..3726097 (+)
• Length: 381 a.a.
• NCBI ID: WP_088037228.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SMT-24
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3719952..3731097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCO34_RS18885	-	3720426..3721142 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
ACCO34_RS18890	narK	3721240..3722430 (-)	1191	WP_014306018.1	nitrate transporter NarK	-
ACCO34_RS18895	argS	3722565..3724235 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
ACCO34_RS18900	-	3724232..3724660 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
ACCO34_RS18905	rapF	3724952..3726097 (+)	1146	WP_088037228.1	tetratricopeptide repeat protein	Regulator
ACCO34_RS18910	-	3726081..3726200 (+)	120	WP_003151066.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACCO34_RS18915	-	3726399..3726602 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
ACCO34_RS18920	-	3726616..3726819 (+)	204	WP_003151062.1	hypothetical protein	-
ACCO34_RS18925	-	3727227..3727508 (+)	282	WP_003151060.1	hypothetical protein	-
ACCO34_RS18930	-	3727552..3728064 (+)	513	WP_003151059.1	stage II sporulation protein M	-
ACCO34_RS18935	-	3728655..3728873 (-)	219	WP_003151056.1	LuxR C-terminal-related transcriptional regulator	-
ACCO34_RS18940	speB	3729044..3729916 (-)	873	WP_003151054.1	agmatinase	-
ACCO34_RS18945	speE	3729976..3730806 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45325.46 Da
• Isoelectric Point: 4.9264

>NTDB_id=1074790 ACCO34_RS18905 WP_088037228.1 3724952..3726097(+) (rapF) [Bacillus velezensis strain SMT-24]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1074790 ACCO34_RS18905 WP_088037228.1 3724952..3726097(+) (rapF) [Bacillus velezensis strain SMT-24]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTCGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (223-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	74.541	100	0.745
rapC	Bacillus subtilis subsp. subtilis str. 168	53.158	99.738	0.53