Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACCO34_RS12330 Genome accession   NZ_CP174160
Coordinates   2515732..2516499 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain SMT-24     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2510732..2521499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS12310 - 2510934..2511746 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  ACCO34_RS12315 ccpN 2511772..2512410 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACCO34_RS12320 glyS 2512511..2514550 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  ACCO34_RS12325 glyQ 2514543..2515430 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACCO34_RS12330 recO 2515732..2516499 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  ACCO34_RS12335 - 2516536..2516679 (-) 144 WP_007408286.1 YqzL family protein -
  ACCO34_RS12340 era 2516835..2517740 (-) 906 WP_003152978.1 GTPase Era -
  ACCO34_RS12345 - 2517721..2518131 (-) 411 WP_003152976.1 cytidine deaminase -
  ACCO34_RS12350 - 2518255..2518629 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ACCO34_RS12355 ybeY 2518610..2519083 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  ACCO34_RS12360 - 2519084..2521216 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=1074765 ACCO34_RS12330 WP_003152982.1 2515732..2516499(-) (recO) [Bacillus velezensis strain SMT-24]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1074765 ACCO34_RS12330 WP_003152982.1 2515732..2516499(-) (recO) [Bacillus velezensis strain SMT-24]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGAAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment