Detailed information NTG0107476

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RGQ30_RS01495
• Genome accession: NZ_AP028947
• Coordinates: 340678..341619 (-)
• Length: 313 a.a.
• NCBI ID: WP_130558658.1
• Uniprot ID: -
• Organism: Limnobacter thiooxidans strain CS-K2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 335678..346619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGQ30_RS01465 (RGQ30_02990)	-	335912..336313 (-)	402	WP_130558663.1	hypothetical protein	-
RGQ30_RS01470 (RGQ30_03000)	rfbB	336452..337480 (+)	1029	WP_130558662.1	dTDP-glucose 4,6-dehydratase	-
RGQ30_RS01475 (RGQ30_03010)	-	337481..337639 (+)	159	WP_298219407.1	hypothetical protein	-
RGQ30_RS01480 (RGQ30_03020)	rfbD	338067..339014 (+)	948	WP_338284646.1	dTDP-4-dehydrorhamnose reductase	-
RGQ30_RS01485 (RGQ30_03030)	-	339017..339925 (-)	909	WP_130558660.1	cell division protein FtsX	-
RGQ30_RS01490 (RGQ30_03040)	-	339947..340681 (-)	735	WP_130558659.1	cell division ATP-binding protein FtsE	-
RGQ30_RS01495 (RGQ30_03050)	pilA	340678..341619 (-)	942	WP_130558658.1	signal recognition particle-docking protein FtsY	Machinery gene
RGQ30_RS01500 (RGQ30_03060)	-	341735..343138 (+)	1404	WP_130558657.1	M16 family metallopeptidase	-
RGQ30_RS01505 (RGQ30_03070)	-	343190..344539 (+)	1350	WP_130558656.1	M16 family metallopeptidase	-
RGQ30_RS01510 (RGQ30_03080)	rsmD	344532..345137 (+)	606	WP_338284648.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RGQ30_RS01515 (RGQ30_03090)	coaD	345192..345695 (+)	504	WP_130558655.1	pantetheine-phosphate adenylyltransferase	-
RGQ30_RS01520	-	345705..346019 (+)	315	WP_130558654.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 313 a.a.
• Molecular weight: 33890.11 Da
• Isoelectric Point: 6.8733

>NTDB_id=107476 RGQ30_RS01495 WP_130558658.1 340678..341619(-) (pilA) [Limnobacter thiooxidans strain CS-K2]
MQIPGQRQDWLGRLKSGLTKTRSGLTSMFTGEKVDEAFFEEMEERLLLADCGLPATELLMQKVRDTVYQKSLTRPEDVRL
VLRDAVFDLLRPLETSMGVDRARPLVMMVVGVNGAGKTTSIGKLANHYAEIGYSVLLAAGDTFRAAAREQLDVWAQRSNV
DVISAEGSDPGAVAFDSVQAGMSRNKHIVICDTAGRLPTQLHLMEELKKIKKVLGKAKMDAPHEIVLVVDATNGQNALQQ
IKAFNDALTLTALVVTKLDGTAKGGILAAMSMSTRVPVAFIGVGEKLGDLRPFSPREFANALVGIDTDGNQNP

Nucleotide

• Length: 942 bp

>NTDB_id=107476 RGQ30_RS01495 WP_130558658.1 340678..341619(-) (pilA) [Limnobacter thiooxidans strain CS-K2]
ATGCAGATTCCTGGTCAAAGACAGGACTGGCTTGGCCGCTTGAAGTCGGGGTTGACCAAAACCCGCTCGGGCCTCACCTC
CATGTTCACCGGCGAAAAGGTGGACGAGGCTTTTTTCGAAGAAATGGAAGAACGCCTGCTGCTGGCCGATTGCGGCTTGC
CAGCCACTGAATTGCTGATGCAGAAAGTGCGCGACACCGTGTACCAGAAAAGCCTGACCAGGCCCGAAGACGTGCGCCTT
GTGCTGCGCGACGCGGTGTTTGACCTGCTTCGTCCACTCGAAACCAGCATGGGTGTTGACCGGGCCCGCCCCCTGGTCAT
GATGGTAGTCGGTGTGAATGGTGCCGGCAAAACCACCAGCATTGGCAAACTGGCCAACCACTACGCAGAAATTGGTTATT
CCGTTCTGTTGGCAGCCGGCGACACCTTCCGAGCAGCAGCGCGCGAGCAACTGGATGTGTGGGCCCAACGCAGCAATGTG
GATGTCATTTCTGCAGAAGGAAGCGACCCGGGCGCAGTAGCCTTCGATTCCGTTCAGGCTGGCATGTCGCGCAACAAGCA
CATCGTGATTTGTGACACCGCAGGCCGCTTGCCTACCCAGCTTCACTTGATGGAGGAACTTAAAAAAATCAAGAAAGTCC
TGGGCAAAGCCAAAATGGACGCACCCCATGAAATAGTGCTGGTGGTCGATGCCACCAACGGCCAAAACGCCTTGCAGCAA
ATCAAGGCCTTCAATGATGCACTGACATTGACTGCACTGGTGGTTACCAAACTGGACGGCACAGCCAAGGGCGGTATTCT
GGCAGCGATGAGCATGAGTACACGTGTGCCGGTGGCGTTCATCGGCGTGGGCGAAAAGCTGGGAGACCTGCGCCCGTTCA
GCCCCCGCGAGTTTGCCAACGCCTTGGTGGGCATTGATACGGACGGAAACCAGAACCCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (24-85)

• SRP54-type protein, GTPase domain (SRP54) (105-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	55.518	95.527	0.53