Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACCO34_RS01775 Genome accession   NZ_CP174160
Coordinates   324998..325435 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain SMT-24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 319998..330435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS01735 - 320578..320742 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  ACCO34_RS01740 - 320856..322058 (+) 1203 WP_139890341.1 GTP-binding protein -
  ACCO34_RS01745 - 322123..323259 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  ACCO34_RS01750 - 323274..323708 (+) 435 WP_003156592.1 RDD family protein -
  ACCO34_RS01755 - 323825..324100 (+) 276 WP_371745793.1 YckD family protein -
  ACCO34_RS01760 - 324204..324287 (+) 84 WP_223151977.1 family 1 glycosylhydrolase -
  ACCO34_RS01765 - 324319..324537 (+) 219 Protein_307 family 1 glycosylhydrolase -
  ACCO34_RS01770 nin/comJ 324578..324976 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  ACCO34_RS01775 nucA/comI 324998..325435 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACCO34_RS01780 hxlB 325794..326351 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  ACCO34_RS01785 hxlA 326348..326983 (-) 636 WP_003156586.1 3-hexulose-6-phosphate synthase -
  ACCO34_RS01790 - 327215..327577 (+) 363 WP_003156585.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1074725 ACCO34_RS01775 WP_003156588.1 324998..325435(-) (nucA/comI) [Bacillus velezensis strain SMT-24]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1074725 ACCO34_RS01775 WP_003156588.1 324998..325435(-) (nucA/comI) [Bacillus velezensis strain SMT-24]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGTCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment