Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACCH06_RS13950 Genome accession   NZ_CP174157
Coordinates   2798297..2799043 (-) Length   248 a.a.
NCBI ID   WP_406589091.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2793297..2804043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS13925 mreC 2793693..2794565 (-) 873 WP_003325240.1 rod shape-determining protein MreC -
  ACCH06_RS13930 mreB 2794596..2795609 (-) 1014 WP_003325239.1 cell shape-determining protein MreB -
  ACCH06_RS13935 radC 2795701..2796396 (-) 696 WP_003325238.1 DNA repair protein RadC -
  ACCH06_RS13940 - 2796431..2797000 (-) 570 WP_268477566.1 nucleoside triphosphate pyrophosphatase -
  ACCH06_RS13945 - 2797147..2798163 (-) 1017 WP_258729690.1 SPOR domain-containing protein -
  ACCH06_RS13950 comC 2798297..2799043 (-) 747 WP_406589091.1 prepilin peptidase Machinery gene
  ACCH06_RS13955 - 2799197..2800492 (-) 1296 WP_406589092.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACCH06_RS13960 valS 2800550..2803192 (-) 2643 WP_406589093.1 valine--tRNA ligase -
  ACCH06_RS13965 - 2803639..2803830 (+) 192 WP_003325232.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26907.63 Da        Isoelectric Point: 9.1114

>NTDB_id=1074694 ACCH06_RS13950 WP_406589091.1 2798297..2799043(-) (comC) [Bacillus atrophaeus strain SHZ-24]
MVFVMFILGLIFGSFFYAAGCRIPLQISIIKLRSFCSFCRHPLSYAELIPVFSFFLQKGRCKSCAQKLSLMYPAAELWTA
GLFTAAYLRFGLSGELFVALLLISLLSIIVASDIHYMLIPDSVLIFFLPFLIAGRMIAPLPAWYDSLSGAAAGFFMLVLI
AVLSKGGIGGGDIKLFAVLGIALGVKMLIAAFILAVFIGMLYGACSTLSGKLDRRQPIPFAPAIAAGSLVSYLYGEEILS
LYVKIAMY

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1074694 ACCH06_RS13950 WP_406589091.1 2798297..2799043(-) (comC) [Bacillus atrophaeus strain SHZ-24]
ATGGTTTTTGTCATGTTTATCCTCGGTCTCATCTTCGGGTCCTTTTTCTATGCGGCAGGCTGCCGTATCCCCTTACAAAT
CTCTATTATAAAACTGCGCTCCTTCTGTTCATTCTGCCGCCATCCGTTGTCTTATGCTGAATTAATCCCGGTTTTCTCTT
TCTTTCTGCAAAAAGGCAGATGTAAAAGCTGTGCACAAAAACTGTCGCTGATGTATCCGGCCGCAGAGCTTTGGACAGCG
GGTTTGTTTACGGCAGCTTATCTGCGTTTCGGTTTATCCGGGGAACTTTTTGTCGCGCTGCTGCTCATATCCTTGCTGAG
CATTATCGTGGCATCAGATATTCACTATATGCTGATCCCTGACAGCGTGCTGATATTTTTTCTCCCTTTTTTGATAGCAG
GAAGAATGATTGCACCGCTTCCTGCTTGGTATGATAGTTTATCAGGAGCCGCAGCCGGTTTTTTCATGTTGGTCTTGATT
GCCGTACTCAGTAAAGGAGGAATCGGGGGCGGCGATATTAAGCTATTTGCCGTTTTGGGTATCGCGCTTGGTGTTAAAAT
GCTGATCGCAGCCTTTATCCTTGCTGTCTTTATAGGTATGCTGTATGGCGCATGCAGCACGCTGTCAGGAAAGCTCGATC
GAAGACAGCCGATCCCCTTCGCCCCTGCGATAGCTGCCGGAAGCTTGGTGAGTTATCTGTACGGTGAAGAAATATTATCA
CTCTATGTCAAAATCGCCATGTACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

62.348

99.597

0.621

Multiple sequence alignment