Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACCH06_RS13675 Genome accession   NZ_CP174157
Coordinates   2750105..2752465 (-) Length   786 a.a.
NCBI ID   WP_406589081.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2745105..2757465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS13655 - 2745169..2746725 (+) 1557 WP_406589080.1 SH3 domain-containing protein -
  ACCH06_RS13660 dtd 2746758..2747201 (-) 444 WP_258729635.1 D-aminoacyl-tRNA deacylase -
  ACCH06_RS13665 relA 2747214..2749418 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  ACCH06_RS13670 - 2749587..2750099 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  ACCH06_RS13675 recJ 2750105..2752465 (-) 2361 WP_406589081.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACCH06_RS13680 - 2752533..2752871 (-) 339 WP_406589082.1 lipopolysaccharide assembly LapA domain-containing protein -
  ACCH06_RS13685 - 2752948..2753445 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  ACCH06_RS13690 secDF 2753643..2755865 (-) 2223 WP_406589083.1 protein translocase subunit SecDF -
  ACCH06_RS13695 - 2755904..2756200 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88223.86 Da        Isoelectric Point: 4.8692

>NTDB_id=1074691 ACCH06_RS13675 WP_406589081.1 2750105..2752465(-) (recJ) [Bacillus atrophaeus strain SHZ-24]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKEAISQQ
EPIMIYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKEL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLQMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMVEQQGLNRSAIVVAKPGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCRDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETLVALPSEKRVIVCFKEETKQLLQNEELRHQLHAVSSEQEARDLELDGAYVVFLDAPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDVKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMNQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1074691 ACCH06_RS13675 WP_406589081.1 2750105..2752465(-) (recJ) [Bacillus atrophaeus strain SHZ-24]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTAAAAAGAGGATTTGATACAGCGGAAAGCGCAAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAGATGAAGGGCATGAAAGAAGCAGTTGAGCGGATTAAAGAGGCCATTTCACAGCAA
GAGCCCATTATGATATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCCGTCATGCTGAAAACATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGCTCGATTA
AAGAGCAAGGCTTCTCCCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGGAACTA
GGACTGGATGTCATCATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCATCCGAAGCA
GCCGGGATGCACCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TGCCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCCGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTAGGCATGCAGAAGCTTCAAATGACAAACCGGCCGGGGCTAAAAGCATTGATTAAACTGTCAGGCGGTGACAT
CGGACAAGCGAATGAAGAAACAATCGGCTTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCAGACGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAAATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAGCAGCAAGGGCTCAATAGATCTGCCATCGT
AGTGGCAAAGCCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCAGAGACATCCTTCCCCATTTCGGAGGACATCCGATGGCTGCAGGAATGACACTTTCTGCCGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAAGATTTTATTCCAGTTCAGGAAATTG
ATCTCGTATGCAGCGTAGAGGATATTACGGTTGAAAGCATATCTGAAATCAATCTCCTGTCTCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCGCTTTTGGAAGACGTGCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACGGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAGGGGGAGCTTGAGACAGGTATTGTGCCAGGTT
CACGAATCTCATTAGTCGGCGAAATGTCGATTAACGAATGGAATAACAGAAAAAAACCCCAGTTAATGATAAAGGATGCA
GCCGTTTCTGAGTGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACATTAGTTGCGCTTCCGTCTGAAAA
ACGGGTCATTGTTTGTTTTAAGGAGGAAACGAAACAGCTGCTTCAAAACGAAGAGCTGCGCCATCAGCTGCATGCGGTAA
GCTCGGAGCAAGAAGCGAGAGACCTTGAACTGGATGGCGCATATGTGGTATTTCTTGATGCGCCTCCTTCACTAGATCTG
CTTTCAAGCTTGGTAGAAGGAAAGAGACCCGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
GTTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGCTGAAAAGAGGAACTTTTGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGTGAAAAAACGCGATTTGACAGACTCGCAAACCTATCAGGCAAA
ACAGCAGCTGATGGAATTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ATCAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.606

100

0.846

Multiple sequence alignment