Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACCH06_RS13215 Genome accession   NZ_CP174157
Coordinates   2670038..2670661 (-) Length   207 a.a.
NCBI ID   WP_258729536.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2665038..2675661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS13185 rpsT 2665332..2665598 (+) 267 WP_003325396.1 30S ribosomal protein S20 -
  ACCH06_RS13190 holA 2665613..2666656 (-) 1044 WP_258729534.1 DNA polymerase III subunit delta -
  ACCH06_RS13195 - 2666696..2666845 (-) 150 WP_181279838.1 hypothetical protein -
  ACCH06_RS13200 - 2666886..2667020 (+) 135 WP_003229983.1 YqzM family protein -
  ACCH06_RS13205 comEC 2667061..2669394 (-) 2334 WP_258729535.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACCH06_RS13210 - 2669401..2669970 (-) 570 WP_003325392.1 ComE operon protein 2 -
  ACCH06_RS13215 comEA 2670038..2670661 (-) 624 WP_258729536.1 helix-hairpin-helix domain-containing protein Machinery gene
  ACCH06_RS13220 comER 2670745..2671566 (+) 822 WP_258729537.1 late competence protein ComER -
  ACCH06_RS13225 - 2671636..2672376 (-) 741 WP_258729538.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  ACCH06_RS13230 rsfS 2672373..2672729 (-) 357 WP_003325387.1 ribosome silencing factor -
  ACCH06_RS13235 yqeK 2672746..2673306 (-) 561 WP_010789259.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACCH06_RS13240 - 2673296..2673865 (-) 570 WP_003325385.1 nicotinate-nucleotide adenylyltransferase -
  ACCH06_RS13245 yhbY 2673877..2674167 (-) 291 WP_003325384.1 ribosome assembly RNA-binding protein YhbY -
  ACCH06_RS13250 aroE 2674161..2675003 (-) 843 WP_216413429.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21918.78 Da        Isoelectric Point: 4.6181

>NTDB_id=1074689 ACCH06_RS13215 WP_258729536.1 2670038..2670661(-) (comEA) [Bacillus atrophaeus strain SHZ-24]
MNWFYQHKKIILTAGAAVIFIVILLIFPGAKKQEPVQQITASPDTAGTQVQQQESKGDADGEKIIIDIKGAVKHPGVYEL
KTGDRVSQAIEKAGGINSEADEKQVNLAELLQDGTVVYIPSEGEESLPSAAATASVQNGAGKEALVNINTASLEELQAIS
GVGPSKAEAIIAYREENGKFQAVEDITNVSGIGEKSFEKIKSAITVK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1074689 ACCH06_RS13215 WP_258729536.1 2670038..2670661(-) (comEA) [Bacillus atrophaeus strain SHZ-24]
ATGAATTGGTTTTACCAGCACAAAAAAATAATCTTAACGGCAGGTGCTGCTGTCATCTTCATCGTCATCCTGCTTATTTT
TCCCGGCGCAAAGAAGCAGGAGCCTGTTCAGCAAATCACAGCGTCGCCTGACACGGCGGGCACACAAGTTCAGCAGCAAG
AATCGAAAGGTGATGCTGACGGAGAAAAAATTATCATTGATATTAAAGGCGCTGTCAAACATCCGGGTGTTTACGAATTG
AAAACGGGAGACAGAGTTTCACAGGCTATCGAAAAAGCGGGAGGCATTAATTCGGAGGCTGATGAAAAACAAGTAAATTT
AGCTGAACTCCTGCAGGACGGCACTGTCGTGTACATTCCGAGTGAGGGGGAAGAGTCGTTACCAAGCGCTGCCGCAACTG
CTTCTGTGCAAAACGGAGCAGGAAAAGAGGCTTTGGTTAATATCAATACAGCGTCATTAGAGGAACTGCAGGCTATTTCC
GGGGTCGGTCCGTCAAAAGCAGAAGCTATAATAGCTTATCGTGAAGAAAACGGAAAATTTCAAGCCGTTGAAGACATTAC
AAATGTCTCGGGGATCGGCGAAAAATCATTTGAGAAAATAAAATCAGCCATCACAGTTAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(66-120)

Helix-hairpin-helix motif (HHH_3)

(143-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

65.7

100

0.657

Multiple sequence alignment